Items where Author is "Uhrmacher, Adelinde M."

Müller, Felix Johannes and Haack, Fiete and Köster, Till and Uhrmacher, Adelinde M. (2024) Computational model of cell cell interaction in bone remodelling. In: ELAINE 2024, 20-22 Mar 2024, Rostock, Germany. Poster.

Uhrmacher, Adelinde M. and Wilsdorf, Pia and Kreikemeyer, Justin N. (2024) Challenges and promises of self-adaptive simulation models. Simulation: Transactions of the Society for Modeling and Simulation International, 100 (12), pp. 1281-1295.

Uhrmacher, Adelinde M. and Frazier, Peter and Hähnle, Reiner and Klügl, Franziska and Lorig, Fabian and Ludäscher, Bertram and Nenzi, Laura and Ruiz-Martin, Cristina and Rumpe, Bernhard and Szabo, Claudia and Wainer, Gabriel A. and Wilsdorf, Pia (2024) Context, Composition, Automation, and Communication -- The C2AC Roadmap for Modeling and Simulation. ACM Transactions on Modeling and Computer Simulation (TOMACS), 34 (4), pp. 1-51. ISSN 1049-3301.

Kreikemeyer, Justin N. and Burrage, Kevin and Uhrmacher, Adelinde M. (2024) Discovering Biochemical Reaction Models by Evolving Libraries. In: 22nd International conference on Computational Methods in System Biology (CMSB 2024), 16-18 Sep 2024, Pisa, Italy. Proceedings, published by Springer Nature Switzerland, Cham, pp. 117-136.

Köster, Till and Reinhardt, Oliver and Hinsch, Martin and Bijak, Jakub and Uhrmacher, Adelinde M. (2024) A Fast Embedded Language for Continuous-Time Agent-Based Simulation. Journal of Artificial Societies and Social Simulation, 27 (1), p. 10. ISSN 1460-7425.

Wilsdorf, Pia and Zschaler, Steffen and Haack, Fiete and Uhrmacher, Adelinde M. (2024) Potential and challenges of assurance cases for simulation validation. In: 2024 Winter Simulation Conference (WSC 2024), 15-18 Dec 2024, Orlando, Florida, USA.

Wilsdorf, Pia and Reinhardt, Oliver and Prike, Toby and Hinsch, Martin and Bijak, Jakub and Uhrmacher, Adelinde M. (2024) Simulation Studies of Social Systems – Telling the Story Based on Provenance Patterns. Royal Society Open Sciency, 11 (240258), ISSN 2054-5703.

Kreikemeyer, Justin N. and Andelfinger, Philipp and Uhrmacher, Adelinde M. (2024) Towards Learning Stochastic Population Models by Gradient Descent. In: 38th ACM SIGSIM Principles of Advanced Discrete Simulation (PADS 2024), 24-26 Jun 2024, Atlanta, Georgia, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY USA, pp. 88-92.

Cai, Wentong and Carothers, Christopher and Nicol, David M. and Uhrmacher, Adelinde M. (2023) Computer Science Methods for Effective and Sustainable Simulation Studies (Dagstuhl Seminar 22401). Dagstuhl Reports, 12 (10). Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany.

Wilsdorf, Pia and Wolpers, Anja and Hilton, Jason D. and Haack, Fiete and Uhrmacher, Adelinde M. (2023) Automatic Reuse, Adaption, and Execution of Simulation Experiments via Provenance Patterns. ACM Transactions on Modeling and Computer Simulation (TOMACS), 33 (1-2), 4:1-4:27. ISSN 1049-3301 (print) 1558-1195 (online).

Haase, Kevin and Reinhardt, Oliver and Lewin, Wolf-Christian and Weltersbach, Marc Simon and Strehlow, Harry V. and Uhrmacher, Adelinde M. (2023) Agent-based simulation models in fisheries science. Reviews in Fisheries Science & Aquaculture, pp. 1-24. ISSN 2330-8249 (print) 2330-8257(online).

Wilsdorf, Pia and Haase, Kevin and Uhrmacher, Adelinde M. (2023) Automatically Reusing Simulation Experiments in Ecological Modelling and Simulation Studies. In: European Conference on Ecological Modelling (ECEM 2023), 04-08 Sep 2023, Leipzig, Germany. Poster.

Bielfeldt, Meike and Budde-Sagert, Kai and Weis, Nikolai and Buenning, Maren and Staehlke, Susanne and Zimmermann, Julius and Arbeiter, Nils and Mobini, Sahba and González, María Ujué and Rebl, Henrike and Uhrmacher, Adelinde M. and van Rienen, Ursula and Nebe, Barbara (2023) Discrimination between the effects of pulsed electrical stimulation and electrochemically conditioned medium on human osteoblasts. Journal of Biological Engineering, 17 (1), ISSN 1754-1611.

Köster, Till and Uhrmacher, Adelinde M. (2023) Efficient Execution for Domain Specific Languages: Comparing Two Approaches for Demography and Cellular Biology. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2023), 21-23 Jun 2023, Orlando, Florida, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY, USA, pp. 46-47.

Henning, Philipp and Köster, Till and Haack, Fiete and Burrage, Kevin and Uhrmacher, Adelinde M. (2023) Implications of different membrane compartmentalization models in particle-based in silico studies. Royal Society Open Science, 10 (7), e221177. ISSN 2054-5703.

Andelfinger, Philipp and Uhrmacher, Adelinde M. (2023) Synchronous Speculative Simulation of Tightly Coupled Agents in Continuous Time on CPUs and GPUs. Simulation: Transactions of the Society for Modeling and Simulation International, ISSN 0037-5497 (online 1741-3133).

Wilsdorf, Pia and Zuska, Marian and Andelfinger, Philipp and Peters, Florian and Uhrmacher, Adelinde M. (2023) Validation without Data - Formalizing Stylized Facts of Time Series. In: Winter Simulation Conference (WSC 2023), 10-13 Dec 2023, San Antonio, Texas, USA.

Andelfinger, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2023) Zero Lookahead? Zero Problem. The Window Racer Algorithm. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2023), 21-23 Jun 2023, Orlando, Florida, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY, USA, pp. 1-11.

Wilsdorf, Pia and Kirchhübel, Anton Willy and Uhrmacher, Adelinde M. (2023) nbSimGen: Jupyter Notebook Extension for Generating Simulation Experiments. In: Winter Simulation Conference (WSC 2023), 10-13 Dec 2023, San Antonio, Texas, USA.

Ruscheinski, Andreas and Reimler, Anna Lena and Ewald, Roland and Uhrmacher, Adelinde M. (2022) Towards Analyzing the Reclassification Dynamics of ClinVar Variants. In: CMSB 2022: 20th International Conference on Computational Methods in Systems Biology, 14-16 September 2022, Bucharest, Romania. Poster.

Köster, Till and Warnke, Tom and Uhrmacher, Adelinde M. (2022) Generating Fast Specialized Simulators for Stochastic Reaction Networks via Partial Evaluation. ACM Transactions on Modeling and Computer Simulation (TOMACS), 32 (2), pp. 1-25. ISSN 1049-3301 (print) 1558-1195 (online).

Reinhardt, Oliver and Warnke, Tom and Uhrmacher, Adelinde M. (2022) A Language for Agent-Based Discrete-Event Modeling and Simulation of Linked Lives. ACM Transactions on Modeling and Computer Simulation (TOMACS), 32 (1), pp. 1-26. ISSN 1049-3301 (print) 1558-1195 (online).

Reinhardt, Oliver and Warnke, Tom and Uhrmacher, Adelinde M. (2022) Agent-Based Modelling and Simulation with Domain-Specific Languages. In: Towards Bayesian Model-Based Demography. METH (17). Springer International Publishing, Cham, pp. 113-134. ISBN 978-3-030-83039-7.

Ruscheinski, Andreas and Wilsdorf, Pia and Zimmermann, Julius and van Rienen, Ursula and Uhrmacher, Adelinde M. (2022) An Artifact-based Workflow for Finite-Element Simulation Studies. Simulation Modelling Practice and Theory, 116, p. 102464. ISSN 1569-190X.

Andelfinger, Philipp and Piccione, Andrea and Pellegrini, Alessandro and Uhrmacher, Adelinde M. (2022) Comparing Speculative Synchronization Algorithms for Continuous-Time Agent-Based Simulations. In: IEEE/ACM 26th International Symposium on Distributed Simulation and Real Time Applicatiions (DS-RT 2022), 26-28 Sep 2022, Alès, France. Proceedings, published by IEEE Computer Society, Los Alamitos, CA,USA, pp. 57-66.

Wilsdorf, Pia and Uhrmacher, Adelinde M. (2022) Creating PROV-DM Graphs From Model Databases. In: Winter Simulation Conference (WSC 2022), 11-14 Dec 2022, Singapore. Proceedings, published by IEEE, pp. 2118-2129.

Köster, Till and Herrmann, Leon and Andelfinger, Philipp and Uhrmacher, Adelinde M. (2022) GPU-Accelerated Simulation Ensembles of Stochastic Reaction Networks. In: Winter Simulation Conference (WSC 2022), 11-14 Dec 2022, Singapore. Proceedings, published by IEEE, pp. 2570-2581.

Sahm, Franziska and Freiin Grote, Vivica and Zimmermann, Julius and Haack, Fiete and Uhrmacher, Adelinde M. and van Rienen, Ursula and Bader, Rainer and Detsch, Rainer and Jonitz-Heincke, Anika (2022) Long-term stimulation with alternating electric fields modulates the differentiation and mineralization of human pre-osteoblasts. Frontiers in Physiology, 13, ISSN 1664-042X.

Wilsdorf, Pia and Heller, Jakob and Budde, Kai and Zimmermann, Julius and Warnke, Tom and Haubelt, Christian and Timmermann, Dirk and van Rienen, Ursula and Uhrmacher, Adelinde M. (2022) A Model-Driven Approach for Conducting Simulation Experiments. Applied Sciences, 12 (16), ISSN 2076-3417.

Meyer, Tom and Andelfinger, Philipp and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2022) Seamless Simulation-Based Verification and Validation of Event-Driven Software Systems. In: Winter Simulation Conference (WSC 2022), 11-14 Dec 2022, Singapore. Proceedings, published by IEEE, pp. 2130-2141.

Haase, Kevin and Reinhardt, Oliver and Lewin, Wolf-Christian and Strehlow, Harry V. and Uhrmacher, Adelinde M. (2022) Site Choice in Recreational Fisheries - Towards an Agent-Based Approach. In: Winter Simulation Conference (WSC 2022), 11-14 Dec 2022, Singapore. Proceedings, published by IEEE, pp. 819-830.

Köster, Till and Uhrmacher, Adelinde M. and Andelfinger, Philipp (2022) Towards an Open Repository for Reproducible Performance Comparison of Parallel and Distributed Discrete-Event Simulators. In: ACM Conference SIGSIM Principles of Advanced Discrete Simulation (PADS 2022), 08-10 Jun 2022, Atlanta, GA, USA (Virtuell). Proceedings, published by ACM, New York, NY, USA, pp. 31-32.

Peters, Florian and Neuberger, Doris and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2022) A basic macroeconomic agent-based model for analyzing monetary regime shifts. PLoS ONE, 17 (12), e0277615. ISSN 1932-6203.

Andelfinger, Philipp and Uhrmacher, Adelinde M. (2021) Optimistic Parallel Simulation of Tightly Coupled Agents in Continuous Time. In: The 25th International Symposium on Distributed Simulation and Real Time Applocations (IEEE/ACM DS-RT 2021), 27-29 Sep 2021, Valencia, Spain. Proceedings, published by IEEE Computer Society, Los Alamitos, CA, USA, pp. 1-9.

Haack, Fiete and Köster, Till and Uhrmacher, Adelinde M. (2021) Receptor/raft ratio is a determinant for LRP6 phosphorylation and WNT/β-catenin signaling. Frontiers in Cell and Developmental Biology, 9, p. 2085. ISSN 2296-634X.

Budde, Kai and Smith, Jacob and Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2021) Relating simulation studies by provenance—Developing a family of Wnt signaling models. PLoS Computational Biology, 17 (8), pp. 1-21. ISSN 1553-7358 (print) 1553-734X (online).

Johnson, Margaret E. and Chen, Athena and Faeder, James R. and Henning, Philipp and Moraru, Ion I. and Meier-Schellersheim, Martin and Murphy, Robert F. and Prüstel, Thorsten and Theriot, Julie A. and Uhrmacher, Adelinde M. (2021) Quantifying the Roles of Space and Stochasticity in Computer Simulations for Cell Biology and Cellular Biochemistry. Molecular Biology of the Cell, 32 (2), pp. 186-210. ISSN 1059-1524.

Foguelman, Daniel and Henning, Philipp and Uhrmacher, Adelinde M. and Castro, Rodrigo (2021) EB-DEVS: A formal framework for modeling and simulation of emergent behavior in dynamic complex systems. Journal of Computational Science, 53, p. 101387. ISSN 18777503.

Wilsdorf, Pia and Fischer, Nadine and Uhrmacher, Adelinde M. (2021) Exploiting Provenance and Ontologies in Supporting Best Practices for Simulation Experiments: A Case Study on Sensitivity Analysis. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.

Heß, Kristina and Reinhardt, Oliver and Himmelspach, Jan and Uhrmacher, Adelinde M. (2021) A Generalized Population Synthesis Approach for Agent-based Models. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.

Kreikemeyer, Justin N. and Köster, Till and Uhrmacher, Adelinde M. and Warnke, Tom (2021) Inferring Dependency Graphs for Agent-based Models Using Aspect-oriented Programming. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.

Warnke, Tom and Uhrmacher, Adelinde M. (2021) Nonlinear pattern matching in rule-based modeling languages. In: 19th International Conference on Computational Methods in Systems Biology (CMSB 2021), 22-24 Sep 2021, Bordeaux, France. Proceedings, published by Springer International Publishing, Cham, pp. 198-214.

Meyer, Tom and Ruscheinski, Andreas and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2021) Simulation-Supported Engineering of Self-Adaptive Software Systems. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.

Bijak, Jakub and Grow, André and Higham, Philip A. and Hilton, Jason D. and Hinsch, Martin and Lipscombe, Kim and Nurse, Sarah and Prike, Toby and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2021) Teaching A Modelling Process: Reflections From an Online Course. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.

Zimmermann, Julius and Budde, Kai and Arbeiter, Nils and Molina, Francia and Storch, Alexander and Uhrmacher, Adelinde M. and van Rienen, Ursula (2021) Using a digital twin of an electrical stimulation device to monitor and control the electrical stimulation of cells in vitro. Frontiers in Bioengineering and Biotechnology, 9, ISSN 2296-4185.

Ruscheinski, Andreas and Reimler, Anna Lena and Ewald, Roland and Uhrmacher, Adelinde M. (2021) VPMBench: a test bench for variant prioritization methods. BMC Bioinformatics, 22 (1), p. 541. ISSN 1471-2105.

Budde, Kai and Neuhaus, Elisa and Molina, Francia and Zimmermann, Julius and Arbeiter, Nils and Storch, Alexander and van Rienen, Ursula and Uhrmacher, Adelinde M. (2020) Documenting an Electrical Cell Stimulation Experiment–Guidelines at Work. In: Conference on Progress in Electrically Active Implants Tissue and Functional Regeneration (ELAINE 2020), 29-30 Sep 2020, Virtual. Proceedings,, Rostock, Germany, p. 21.

Haack, Fiete and Budde, Kai and Uhrmacher, Adelinde M. (2020) Exploring mechanistic and temporal regulation of LRP6 endocytosis in canonical WNT signaling. Journal of Cell Science, 133 (15), ISSN 0021-9533.

Heller, Jakob and Wilsdorf, Pia and Niemann, Christoph and Plocksties, Franz and Uhrmacher, Adelinde M. and Haubelt, Christian and Timmermann, Dirk (2020) Assisting Early Design Decision For Implantable Neurostimulators Through Virtual Prototyping. In: Conference on Progress in Electrically Active Implants - Tissue and Functional Regeneration (ELAINE 2020), 29-30 Sep 2020, Rostock, Germany. Proceedings,, p. 42. Poster.

Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2020) Conceptual Models in Simulation Studies: Making it Explicit. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2353-2360.

Bijak, Jakub and Higham, Philip and Hilton, Jason D. and Hinsch, Martin and Nurse, Sarah and Prike, Toby and Reinhardt, Oliver and Smith, Peter WF and Uhrmacher, Adelinde M. (2020) Modelling Migration: Decisions, Processes and Outcomes. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2613-2624.

Köster, Till and Warnke, Tom and Uhrmacher, Adelinde M. (2020) Partial evaluation via code generation for static stochastic reaction network models. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2020), 15-17 Jun 2020, Miami, Florida, USA. Proceedings, published by ACM, New York, USA, pp. 159-170.

Köster, Till and Giabbanelli, Philippe J. and Uhrmacher, Adelinde M. (2020) Performance and Soundness of Simulation: A Case Study based on a Cellular Automaton for In-Body Spread of HIV. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2281-2292.

Ruscheinski, Andreas and Wolpers, Anja and Henning, Philipp and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2020) Pragmatic Logic-based Spatio-temporal Pattern Checking in Particle-based Models. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2245-2256.

Kreikemeyer, Justin N. and Hillston, Jane and Uhrmacher, Adelinde M. (2020) Probing the Performance of the Edinburgh Bike Sharing System using SSTL. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2020), 15-17 Jun 2020, Miami, Florida, USA. Proceedings, published by ACM, New York, USA, pp. 141-152.

Staehlke, Susanne and Haack, Fiete and Waldner, Anna-Christin and Koczan, Dirk and Moerke, Caroline and Mueller, Petra and Uhrmacher, Adelinde M. and Nebe, J. Barbara (2020) ROS Dependent Wnt/β-Catenin Pathway and Its Regulation on Defined Micro-Pillars—A Combined In Vitro and In Silico Study. Cells, 9 (8), p. 1784. ISSN 2073-4409.

Warnke, Tom and Uhrmacher, Adelinde M. (2020) Simulation projects with Computer Science undergraduate students. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Poster.

Köster, Till and Henning, Philipp and Uhrmacher, Adelinde M. (2019) Potential based, spatial simulation of dynamically nested particles. BMC Bioinformatics, 20 (607), ISSN 1471-2105.

Budde, Kai and Zimmermann, Julius and Neuhaus, Elisa and Schröder, Max and Uhrmacher, Adelinde M. and van Rienen, Ursula (2019) Requirements for Documenting Electrical Cell Stimulation Experiments for Replicability and Numerical Modeling. In: 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 23-27 July 2019, Berlin, Germany. Proceedings, published by IEEE, pp. 1082-1088.

Budde, Kai and Smith, Jacob and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) WebProv: A web-based tool to access, store, and display provenance information of simulation models. In: 10th "Computational Modeling in Biology Network" (COMBINE) Meeting, 15-19 Jul 2019, Heidelberg, Germany. Poster.

Ruscheinski, Andreas and Wilsdorf, Pia and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2019) Capturing and Reporting Provenance Information of Simulation Studies Based on an Artifact-Based Workflow Approach. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, USA, pp. 185-196.

Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules. In: Modeling Biomolecular Site Dynamics. Methods in Molecular Biology, 1945 . Humana Press, New York, NY, pp. 141-160. ISBN 978-1-4939-9100-6 (print) 978-1-439-9102-0 (Online).

Ruscheinski, Andreas and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Artifact-based Workflows for Supporting Simulation Studies. IEEE Transactions on Knowledge and Data Engineering, 32 (6), pp. 1064-1078. ISSN 1041-4347 (print) 1558-2191 (electronic).

Wilsdorf, Pia and Haack, Fiete and Budde, Kai and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Conducting Systematic, Partly Automated Simulation Studies – Unde Venis et Quo Vadis. In: 17th International Conference of Numerical Analysis and Applied Mathematics, 23-28 Sep 2019, Rhodes, Greece. Proceedings, published by AIP Publishing LCC, AIP Conference Proceedings 2293(1), 020001.

Reinhardt, Oliver and Hinsch, Martin and Bijak, Jakub and Uhrmacher, Adelinde M. (2019) Developing Agent-Based Migration Models In Pairs. In: MPIDR Rostock Retreat on Simulation, 01-03 July 2019, Rostock, Germany. Poster.

Reinhardt, Oliver and Hinsch, Martin and Bijak, Jakub and Uhrmacher, Adelinde M. (2019) Developing Agent-Based Migration Models in Pairs. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Proceedings, published by IEEE, pp. 2713-2724.

Schröder, Max and Raben, Hendrikje and Krüger, Frank and Ruscheinski, Andreas and van Rienen, Ursula and Uhrmacher, Adelinde M. and Spors, Sascha (2019) PROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-Electric Systems. In: 41st Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 23-27 Jul 2019, Berlin, Germany. Proceedings, published by IEEE, pp. 3377-3382.

Warnke, Tom and Uhrmacher, Adelinde M. (2019) Reproducible parallel simulation experiments via pure functional programming. In: 2019 IEEE/ACM 23rd International Symposium on Distributed Simulation and Real Time Applications (DS-RT), 07-09 Oct 2019, Cosenza, Italy. Proceedings, published by IEEE Computer Society, Los Alamitos, CA, USA, pp. 1-8.

Budde, Kai and Wilsdorf, Pia and Smith, Jacob and Haack, Fiete and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Reusing provenance information captured in WebProv for automatic generation of experiment specifications. In: INCOME 2019 (Integrative pathway modeling in systems biology and systems medicine), 25-29 Nov 2019, Berlin, Germany.

Wilsdorf, Pia and Pierce, Maria E. and Hillston, Jane and Uhrmacher, Adelinde M. (2019) Round-based Super-Individuals - Balancing Speed and Accuracy. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, USA, pp. 95-98.

Wilsdorf, Pia and Zimmermann, Julius and Dombrowsky, Marcus and van Rienen, Ursula and Uhrmacher, Adelinde M. (2019) Simulation Experiment Schemas - Beyond Tools and Simulation Approaches. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Proceedings, published by IEEE, pp. 2783-2794.

Haase, Kevin and Reinhardt, Oliver and Uhrmacher, Adelinde M. and Weltersbach, Marc Simon and Lewin, Wolf-Christian and Strehlow, Harry V. (2019) Towards An Agent-based Model for Managing Recreational Fisheries of Western Baltic Cod. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Poster.

Reinhardt, Oliver and Warnke, Tom and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Valid and Reproducible Simulation Studies—Making It Explicit. In: Computer Simulation Validation. Fundamental Concepts, Methodological Frameworks, Philosophical Perspectives. Springer International Publishing, Cham, pp. 607-672. ISBN 978-3-319-70765-5.

Köster, Till and Drüeke, Nicola M. and Uhrmacher, Adelinde M. (2018) Latency Optimized Execution of Sequential Simulators by Parallel Parameter Optimization. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Poster.

Köster, Till and Hauptmann, Felix and Uhrmacher, Adelinde M. (2018) Optimizing Data Structures for Highly Dynamic Content in Collective, Adaptive Systems. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Poster.

Reinhardt, Oliver and Uhrmacher, Adelinde M. (2018) Computational Methods for Modeling Migration. In: Uncertainty and Complexity of Migration, 20-21 Nov 2018, London, UK.

Budde, Kai and Helms, Tobias and Haack, Fiete and Uhrmacher, Adelinde M. (2018) Modeling long-range Wnt signaling with the domain-specific language ML-Rules. In: Workshop on "Multiscale modeling and simulations to bridge molecular and cellular scales" of the Centro di Ricerca Matematica Ennio De Giorgi, 1-5 Oct 2018, Pisa, Italy. Poster.

Reinhardt, Oliver and Hilton, Jason D. and Warnke, Tom and Bijak, Jakub and Uhrmacher, Adelinde M. (2018) Streamlining simulation experiments with agent-based models in demography. Journal of Artificial Societies and Social Simulation, 21 (3),

Pierce, Maria E. and Krumme, Uwe and Uhrmacher, Adelinde M. (2018) Building Simulation Models of Complex Ecological Systems by Successive Composition and Reusing Simulation Experiments. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 2363-2374.

Henning, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2018) Challenges in reproducing an ODE vesicle transport model with particles in continuous space. In: Multiscale modeling and simulations to bridge molecular and cellular scales, 1-5 Oct 2018, Pisa, Italy. Poster.

Warnke, Tom and Uhrmacher, Adelinde M. (2018) Complex simulation experiments made easy. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 410-424.

Taylor, Simon J. E. and Eldabi, Tillal and Monks, Tom and Rabe, Markus and Uhrmacher, Adelinde M. (2018) Crisis, What Crisis: Does Reproducibility in Modeling & Simulation Really Matter? In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 749-762.

Ruscheinski, Andreas and Budde, Kai and Warnke, Tom and Wilsdorf, Pia and Hiller, Bjarne Christian and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2018) Generating Simulation Experiments Based on Model Documentations and Templates. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 715-726.

Köster, Till and Uhrmacher, Adelinde M. (2018) Handling Dynamic Sets of Reactions in Stochastic Simulation Algorithms. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2018), 23-25 May 2018, Rome, Italy. Proceedings, published by ACM, New York, NY, USA, pp. 161-164.

Helms, Tobias and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2018) Hybrid Simulation of Dynamic Reaction Networks in Multi-Level Models. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2018), 23-25 May 2018, Rome, Italy. Proceedings, published by ACM, New York, NY, USA, pp. 133-144.

Wilsdorf, Pia and Ruscheinski, Andreas and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2018) Managing Provenance of Simulation Studies. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Poster.

Reinhardt, Oliver and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2018) ODD+P: Complementing the ODD Protocol With Provenance Information. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 727-738.

Warnke, Tom and Krüger, Frank and Uhrmacher, Adelinde M. (2018) Open Simulation Software - Development and Application. In: ASIM 2018 - 24. Symposium Simulationstechnik, 4-5 Oct 2018, Hamburg, Germany. Proceedings, published by ARGESIM Verlag Wien, pp. 307-312.

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2018) Reproducible and flexible simulation experiments with ML-Rules and SESSL. Bioinformatics, 34 (8), pp. 1424-1427. ISSN 1367-4803.

Meyer, Tom and Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2018) Runtime Code Generation for Interpreted Domain-Specific Modeling Languages. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 605-616.

Budde, Kai and Krummrich, Elisa and Ruscheinski, Andreas and Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2018) The Story Behind Wnt Simulation Models: Interrelating Wnt Models by Provenance Information. In: European Wnt Meeting 2018, 12-14 Sep 2018, Heidelberg. Poster.

Wilsdorf, Pia and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2018) Synergies of Simulation Model Documentation and Simulation Experiment Generation. In: 16th International Conference on Computational Methods in Systems Biology (CMSB 2018), 12-14 Sep 2018, Brno, Czech Republic. Poster.

Ruscheinski, Andreas and Gjorgevikj, Dragana and Dombrowsky, Marcus and Budde, Kai and Uhrmacher, Adelinde M. (2018) Towards a PROV Ontology for Simulation Models. In: Provenance and Annotation of Data and Processes, 09-10 Jul 2018, London, UK. Proceedings, published by Springer International Publishing, pp. 192-195.

Pierce, Maria E. and Warnke, Tom and Krumme, Uwe and Helms, Tobias and Hammer, Cornelius and Uhrmacher, Adelinde M. (2017) Developing and validating a multi-level ecological model of eastern Baltic cod (Gadus morhua) in the Bornholm Basin - a case for domain-specific languages. Ecological Modeling, 361, pp. 49-65. ISSN 0304-3800.

Köster, Till and Uhrmacher, Adelinde M. (2017) Multi-Level Particle-Based Modeling and Simulation of Cell Biological Systems. In: V International Conference on Particle-Based Methods, 26-28 Sep 2017, Hannover, Germany. Invited Talk.

Luo, Jiankai and Talabattula, Venkata Ajay Narendra and Morgan, Peter and Frech, Moritz and Uhrmacher, Adelinde M. and Herchenröder, Ottmar and Pützer, Brigitte M. and Rolfs, Arndt (2017) Non-canonical pathway induced by Wnt3a regulates β-catenin via Pyk2 in differentiating human neural progenitor cells. Biochemical and Biophysical Research Communications, 491 (1), pp. 40-46. ISSN 0006-291X.

Bock, Conrad and Dandashi, Fatma and Friedenthal, Sanford and Harrison, Nathalie and Jenkins, Steven and McGinnis, Leon and Sztipanovits, Janos and Uhrmacher, Adelinde M. and Zhang, Lin (2017) Conceptual Modeling. In: Research Challenges in Modeling and Simulation for Engineering Complex Systems. Simulation Foundations, Methods and Applications . Springer, Cham, pp. 23-44. ISBN 978-3-319-58543-7 (Print), 978-3-319-58544-4 (Online).

Helms, Tobias and Warnke, Tom and Maus, Carsten and Uhrmacher, Adelinde M. (2017) Semantics and Efficient Simulation Algorithms of an Expressive Multi-Level Modeling Language. ACM Transactions on Modeling and Computer Simulation (TOMACS), 27 (2), 8:1-8:25. ISSN 1049-3301 (print) 1558-1195 (online).

Peng, Danhua and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2017) Reusing simulation experiment specifications in developing models by successive composition — a case study of the Wnt/β-catenin signaling pathway. Simulation: Transactions of the Society for Modeling and Simulation International, 93 (8), pp. 659-677. ISSN 0037-5497 (online 1741-3133).

Reinhardt, Oliver and Uhrmacher, Adelinde M. (2017) An Efficient Simulation Algorithm for Continuous-Time Agent-Based Linked Lives Models. In: 2017 Spring Simulation Multi-Conference, 23-26 Apr 2017, Virginia Beach, Virginia, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, 9:1-9:12.

Köster, Till and Perumalla, Kalyan and Uhrmacher, Adelinde M. (2017) Efficient Simulation of Nested Hollow Sphere Intersections for Dynamically Nested Compartmental Models in Cell Biology. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2017), 24-26 May 2017, Singapore. Proceedings, published by ACM New York, NY, USA, pp. 173-183.

Budde, Kai and Warnke, Tom and Uhrmacher, Adelinde M. and Schätz, Eric and Starke, Jens and Haack, Fiete (2017) Exploiting equation-free analysis for multi-level, agent-based models in cell biology. In: Winter Simulation Conference (WSC 2017), 3-6 Dec 2017, Las Vegas, NV, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 4564-4565. Poster.

Henning, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2017) Idiosyncracies in Multi-Spatial Modeling. In: 15th Conference on Computational Methods in Systems Biology (CMSB 2017), 27-29 Sep 2017, Darmstadt, Germany. Poster.

Warnke, Tom and Reinhardt, Oliver and Klabunde, Anna and Willekens, Frans and Uhrmacher, Adelinde M. (2017) Modelling and Simulating Decision Processes of Linked Lives - An Approach Based on Concurrent Processes and Stochastic Race. Population Studies, 71 (sup1), pp. 69-83. ISSN 0032-4728 (print) 1477-4747 (online).

Warnke, Tom and Uhrmacher, Adelinde M. (2017) Practical expressiveness of internal and external domain­specific modeling languages. In: Winter Simulation Conference (WSC 2017), 3-6 Dec 2017, Las Vegas, NV, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 4566-4567. Poster.

Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2017) Provenance in Modeling and Simulation Studies - Bridging Gaps. In: Winter Simulation Conference (WSC 2017), 3-6 Dec 2017, Las Vegas, NV, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 872-883.

Warnke, Tom and Roesicke, Lars and Schulz, Hans-Jörg and Uhrmacher, Adelinde M. (2017) Simulation Galleries - Combining Experiment Design and Visual Analytics. In: INFORMS Simulation Society 2017 Research Workshop (I-Sim 2017), 31 Jul - 02 Aug 2017, University of Durham, UK. Poster.

Reinhardt, Oliver and Uhrmacher, Adelinde M. (2017) A domain-specific modeling language for simulating linked lives. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2017), 24-26 May 2017, Singapore. Poster.

Peng, Danhua and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2016) Reusing simulation experiment specifications to support developing models by successive extension. Simulation Modelling Practice and Theory, 68, pp. 33-53. ISSN 1569-190X.

Bittig, Arne T. and Uhrmacher, Adelinde M. (2016) ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-level Rule-based Models in Cell Biology. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14 (6), pp. 1339-1349. ISSN 1545-5963.

Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. In: 9th EAI International Conference on Performance Evaluation Methodologies and Tools, 14-16 Dec 2015, Berlin, Germany. Proceedings, published by ICST, Brussels, Belgium, pp. 149-152.

Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. EAI Endorsed Transactions on Collaborative Computing, 16 (10), e2. ISSN 2312-8623.

Steiniger, Alexander and Uhrmacher, Adelinde M. (2016) Intensional Couplings in Variable-Structure Models: An Exploration Based on Multilevel-DEVS. ACM Transactions on Modeling and Computer Simulation (TOMACS), 26 (2), 9:11-9:27. ISSN 1049-3301 (print) 1558-1195 (online).

Kossow, Christina and Helms, Tobias and Kreutzer, Jan M. and Martens, Alke and Uhrmacher, Adelinde M. (2016) Evaluating Different Modeling Languages Based on a User Study. In: 49th Annual Simulation Symposium (ANNS 2016), 3-6 Apr 2016, Pasadena, CA, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, 18:1-18:8.

Uhrmacher, Adelinde M. and Brailsford, Sally and Liu, Jason and Rabe, Markus and Tolk, Andreas (2016) Panel — Reproducible research in discrete event simulation — A must or rather a maybe? In: Winter Simulation Conference (WSC 2016), 11-14 Dec 2016, Washington D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1301-1315.

Warnke, Tom and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2016) Population-based CTMCs and Agent-based Models. In: Winter Simulation Conference 2016, 11-14 Dec 2016, Washington D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1253-1264.

Warnke, Tom and Uhrmacher, Adelinde M. (2016) Spatiotemporal Pattern Matching in RoboCup. In: German Conference on Multiagent System Technologies (MATES) 2016, 27-30 Sep 2016, Klagenfurt, Austria. Proceedings, published by Springer, Cham, LNCS, volume 9872, pp. 89-104.

Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2015) Automatic Runtime Adaptation for Component-Based Simulation Algorithms. ACM Transactions on Modeling and Computer Simulation (TOMACS), 26 (1), 7:1-7:24. ISSN 1049-3301 (print) 1558-1195 (online).

Schützel, Johannes and Stieber, Sebastian and Haubelt, Christian and Uhrmacher, Adelinde M. (2015) Targeted on-line data extraction with SystemXtract. In: Proceedings of the 8th International Conference on Simulation Tools and Techniques (SIMUTOOLS 2015), 24-26 Aug 2015, Athens, Greece. Proceedings, published by ICST (Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering), Brussels, Belgium, pp. 228-237.

Haack, Fiete and Lemcke, Heiko and Ewald, Roland and Rharass, Tareck and Uhrmacher, Adelinde M. (2015) Spatio-temporal Model of Endogenous ROS and Raft-Dependent WNT/Beta-Catenin Signaling Driving Cell Fate Commitment in Human Neural Progenitor Cells. PLoS Computational Biology, 11 (3), e104106. ISSN 1553-7358 (print) 1553-734X (online).

Helms, Tobias and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2015) Bayesian changepoint detection for generic adaptive simulation algorithms. In: 48th Annual Simulation Symposium (ANSS 2015) part of the Spring Simulation Multiconference (SpringSim 2015), 12-15 Apr, Alexandria, VA, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, pp. 62-69.

Peng, Danhua and Warnke, Tom and Uhrmacher, Adelinde M. (2015) Domain-Specific Languages for Flexbily Experimenting with Stochastic Models. SNE Simulation Notes Europe, 25 (2), pp. 117-122. ISSN 2305-9974.

Warnke, Tom and Peng, Danhua and Uhrmacher, Adelinde M. (2015) Domain-Specific Languages for Flexibly Experimenting With Models. In: Workshop der ASIM/GI-Fachgruppen STS (Simulation Technischer Systeme) und GMMS (Grundlagen und Methoden in Modellbildung und Simulation), 18-19 Jun, Stralsund, Germany. Proceedings, published by ARGESIM Report, Band 50, pp. 285-286.

Pierce, Maria E. and Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. and Krumme, Uwe and Hammer, Cornelius (2015) Individual-based cod simulation with ML-Rules. In: Winter Simulation Conference (WSC 2015), 6-9 Dec 2015, Huntington Beach, CA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 3192-3193. Poster.

Guo, Gang and Bittig, Arne T. and Uhrmacher, Adelinde M. (2015) Lattice Monte Carlo simulation of Galilei variant anomalous diffusion. Journal of Computational Physics, 288, pp. 167-180. ISSN 0021-9991.

Warnke, Tom and Steiniger, Alexander and Uhrmacher, Adelinde M. and Klabunde, Anna and Willekens, Frans (2015) ML3: a language for compact modeling of linked lives in computational demography. In: Winter Simulation Conference (WSC 2015), 6-9 Dec 2015, Huntington Beach, CA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 2764-2775.

Warnke, Tom and Klabunde, Anna and Plath, Sebastian and Reinhardt, Oliver and Willekens, Frans and Uhrmacher, Adelinde M. (2015) Modelling and Simulating Decision Processes with a Domain Specific Language. In: Workshop: The science of choice - How to model the decision-making process?, 28-30 Oct 2015, Rostock, Germany.

Gilbert, David and Heiner, Monika and Takahashi, Koichi and Uhrmacher, Adelinde M. (2015) Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481). Schloss Dagstuhl--Leibniz-Zentrum für Informatik, Dagstuhl, Germany.

Uhrmacher, Adelinde M. (2015) The Role of Domain Specific Languages in Modeling and Simulation. In: 5th International Conference on Simulation and Modeling Methodologies, Technologies and Applications (SIMULTECH 2015), 21-23 Jul 2015, Colmar, Alsace, France. Invited Talk.

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2015) Syntax and Semantics of a Multi-Level Modeling Language. In: 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2015), 10-12 Jun 2015, London, UK. Proceedings, published by ACM, New York, NY, USA, pp. 133-144.

Schützel, Johannes and Uhrmacher, Adelinde M. (2015) Targeted Extraction of Simulation Data. In: 19th IEEE/ACM International Symposium on Distributed Simulation and Real Time Applications (DS-RT 2015), 14-16 Oct 2015, Chengdu, China. Proceedings, published by IEEE, Print ISSN: 1550-6525, pp. 10-17.

Kossow, Christina and Rybacki, Stefan and Millat, Thomas and Rateitschak, Katja and Jaster, Robert and Uhrmacher, Adelinde M. and Wolkenhauer, Olaf (2015) An explicit numerical scheme to efficiently simulate molecular diffusion in environments with dynamically changing barriers. Mathematical and Computer Modelling of Dynamical Systems, 21 (6), pp. 535-559. ISSN 1387-3954 (print) 1744-5051 (online).

Leye, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2014) Composing Problem Solvers for Simulation Experimentation: A Case Study on Steady State Estimation. PLoS ONE, 9 (4), e91948. ISSN 1932-6203.

Warnke, Tom and Uhrmacher, Adelinde M. (2014) An Approach for Spatial Pattern Matching in Simulation Trajectories. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.

Rybacki, Stefan and Haack, Fiete and Wolf, Karsten and Uhrmacher, Adelinde M. (2014) Developing simulation models - from conceptual to executable model and back - an artifact-based workflow approach. In: 7th International ICST Conference on Simulation Tools and Techniques (SIMUTools 2014), 17-19 Mar 2014, Lisbon, Portugal. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, pp. 21-30.

Rybacki, Stefan and Helms, Tobias and Moldenhauer, Lars and Uhrmacher, Adelinde M. (2014) GPU-Based Calculation Of Trajectory Similarities. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.

Helms, Tobias and Uhrmacher, Adelinde M. (2014) Hybrid Execution of Dynamic Rule-based Multi-level Models. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.

Bittig, Arne T. and Matschegewski, Claudia and Nebe, J. Barbara and Stählke, Susanne and Uhrmacher, Adelinde M. (2014) Membrane related dynamics and the formation of actin in cells growing on micro-topographies: a spatial computational model. BMC Systems Biology, 8 (1), p. 106. ISSN 1752-0509.

Fishwick, Paul A. and Brailsford, Sally C. and Taylor, Simon J. E. and Tolk, Andreas and Uhrmacher, Adelinde M. (2014) Modeling for everyone: emphasizing the role of modeling in stem education. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 2786-2796.

Helms, Tobias and Maus, Carsten and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Multi-level modeling and simulation of cell biological systems with ML-rules: a tutorial. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 177-191.

Schützel, Johannes and Peng, Danhua and Uhrmacher, Adelinde M. and Perrone, L. Felipe (2014) Perspectives on languages for specifying simulation experiments. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 2836-2847.

Bittig, Arne T. and Reinhardt, Florian and Baltrusch, Simone and Uhrmacher, Adelinde M. (2014) Predictive Modelling of Mitochondrial Spatial Structure and Health. In: International Conference on Computational Methods in Systems Biology (CMSB 2014), 17-19 Nov 2014, Manchester, UK. Proceedings, published by Springer, Cham, Lecture Notes in Computer Science (LNCS, Volume 8859), pp. 252-255.

Ewald, Roland and Uhrmacher, Adelinde M. (2014) SESSL: A domain-specific language for simulation experiments. ACM Transactions on Modeling and Computer Simulation (TOMACS), 24 (2), 11:1-11:25. ISSN 1049-3301 (print) 1558-1195 (online).

Warnke, Tom and Peng, Danhua and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Towards a Language for Specifying Properties of Simulation Trajectories. In: International Conference on Computational Methods in Systems Biology (CMSB 2014), 17-19 Nov 2014, Manchester, UK. Poster.

Peng, Danhua and Ewald, Roland and Uhrmacher, Adelinde M. (2014) Towards semantic model composition via experiments. In: SIGSIM Principles of Advanced Discrete Simulation (PADS 2014), 18-21 May 2014, Denver, CO, USA. Proceedings, published by ACM, NewYork, USA, pp. 151-162.

Steiniger, Alexander and Uhrmacher, Adelinde M. and Zinn, Sabine and Gampe, Jutta and Willekens, Frans (2014) The role of languages for modeling and simulating continuous-time multi-level models in demography. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 2978-2989.

Schützel, Johannes and Meyer, Holger and Uhrmacher, Adelinde M. (2014) A stream-based architecture for the management and on-line analysis of unbounded amounts of simulation data. In: SIGSIM Principles of Advanced Discrete Simulation (PADS 2014), 18-21 May 2014, Denver, CO, USA. Proceedings, published by ACM, NewYork, USA, pp. 83-94.

John, Mathias and Schulz, Hans-Jörg and Schumann, Heidrun and Uhrmacher, Adelinde M. and Unger, Andrea (2013) Constructing and visualizing chemical reaction networks from pi-calculus models. Formal Aspects of Computing, 25 (5), pp. 723-742. ISSN 0934-5043.

Zinn, Sabine and Himmelspach, Jan and Uhrmacher, Adelinde M. and Gampe, Jutta (2013) Building Mic-Core, a Specialized M&S Software to Simulate Multi-State Demographic Micro Models, Based on JAMES II, a General M&S Framework. The Journal of Artificial Societies and Social Simulation, 16 (3), p. 5. ISSN 1460-7425.

Helms, Tobias and Luboschik, Martin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2013) An Approximate Execution of Rule-Based Multi-level Models. In: 11th International Conference on Computational Methods in Systems Biology (CMSB 2013), 22-24 Sep 2013, Klosterneuburg, Austria. Proceedings, published by Springer, Berlin, Heidelberg, Lecture Notes in Computer Science (LNCS), volume 8130, pp. 19-32.

Steiniger, Alexander and Uhrmacher, Adelinde M. (2013) Composing Variable Structure Models - A Revision of COMO. In: 3rd International Conference on Simulation and Modeling Methodologies, Technologies and Applications (SIMULTECH 2013), 29-31 July 2013, Reykjavik, Iceland. Proceedings, published by SciTePress, pp. 286-293.

Nähring, Sebastian and Ewald, Roland and Uhrmacher, Adelinde M. and Maus, Carsten (2013) From standardized modeling formats to modeling languages and back - An exploration based on SBML and ML-Rules. In: Winter Simulations Conference (WSC 2013), 08-11 Dec 2013, Washington, D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 1359-1370.

Haack, Fiete and Burrage, Kevin and Redmer, Ronald and Uhrmacher, Adelinde M. (2013) Studying the Role of Lipid Rafts on Protein Receptor Bindings with Cellular Automata. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (3), pp. 760-770. ISSN 1545-5963.

Schützel, Johannes and Ewald, Roland and Uhrmacher, Adelinde M. (2013) Towards a general foundation for formalism-specific instrumentation languages. In: Winter Simulation Conference (WSC 2013), 08-11 Dec 2013, Washington D.C., USA. Proceedings, published by IEEE Press, Piscataway, NJ, USA, pp. 4008-4009. Poster.

Peng, Danhua and Steiniger, Alexander and Helms, Tobias and Uhrmacher, Adelinde M. (2013) Towards composing ML-Rules models. In: Winter Simulation Conference (WSC 2013), 08-11 Dec 2013, Washington D.C., USA. Proceedings, published by IEEE Press, Piscataway, NJ, USA, pp. 4010-4011. Poster.

Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2013) A generic adaptive simulation algorithm for component-based simulation systems. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2013), 19-22 May 2013, Montreal, QC, Canada. Proceedings, published by ACM, NewYork, USA, pp. 11-22.

Mazemondet, Orianne and John, Mathias and Leye, Stefan and Rolfs, Arndt and Uhrmacher, Adelinde M. (2012) Elucidating the Sources of β-Catenin Dynamics in Human Neural Progenitor Cells. PLoS ONE, 7 (8), e42792. ISSN 1932-6203.

Nähring, Sebastian and Maus, Carsten and Ewald, Roland and Uhrmacher, Adelinde M. (2012) Automated transformation between modeling languages with different expressiveness: challenges and results from a use case with SBML and ML-Rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 371:1-371:2. Poster.

Leye, Stefan and Uhrmacher, Adelinde M. (2012) GUISE - a tool for GUIding simulation experiments. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 385:1-385:2. Poster.

Luboschik, Martin and Maus, Carsten and Schulz, Hans-Jörg and Schumann, Heidrun and Uhrmacher, Adelinde M. (2012) Heterogeneity-based guidance for exploring multiscale data in systems biology. In: 2nd IEEE Symposium on Biological Data Visualization (BioVis 2012), 14-15 Oct 2012, Seattle, WA, USA. Proceedings, published by IEEE, pp. 33-40.

Luboschik, Martin and Rybacki, Stefan and Ewald, Roland and Schwarze, Benjamin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2012) Interactive visual exploration of simulator accuracy: a case study for Stochastic Simulation Algorithms. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 419:1-419:12.

Steiniger, Alexander and Krüger, Frank and Uhrmacher, Adelinde M. (2012) Modeling agents and their environment in multi-level-DEVS. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 233:1-233:12.

Taylor, Simon J. E. and Fujimoto, Richard and Page, Ernest H. and Fishwick, Paul A. and Uhrmacher, Adelinde M. and Wainer, Gabriel A. (2012) Panel on grand challenges for modeling and simulation. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 232:1-232:15.

Ewald, Roland and Uhrmacher, Adelinde M. (2012) Setting up simulation experiments with SESSL. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 379:1-379:2. Poster.

Uhrmacher, Adelinde M. (2012) Seven pitfalls in modeling and simulation research. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 318:1-318:12.

Bittig, Arne T. and Uhrmacher, Adelinde M. and Matschegewski, Claudia and Nebe, J. Barbara (2012) Spatial simulation of actin filament dynamics on structured surfaces. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 364:1-364:2. Poster.

Schützel, Johannes and Himmelspach, Jan and Meyer, Holger and Heuer, Andreas and Uhrmacher, Adelinde M. (2012) Streaming data management for the online processing of simulation data. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 397:1-397:2. Poster.

Rybacki, Stefan and Leye, Stefan and Himmelspach, Jan and Uhrmacher, Adelinde M. (2012) Template and Frame Based Experiment Workflows in Modeling and Simulation Software with WORMS. In: Eighth IEEE World Congress on Services (SERVICES 2012), 24-29 Jun 2012, Honolulu, HI, USA. Proceedings, published by IEEE, pp. 25-32.

Helms, Tobias and Himmelspach, Jan and Maus, Carsten and Oliver, Röwer and Schützel, Johannes and Uhrmacher, Adelinde M. (2012) Toward a language for the flexible observation of simulations. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 418:1-418:12.

Luboschik, Martin and Tominski, Christian and Bittig, Arne T. and Uhrmacher, Adelinde M. and Schumann, Heidrun (2012) Towards Interactive Visual Analysis of Microscopic-Level Simulation Data. In: Interactive Visual Analysis of Data (SIGRAD 2012), 29-30 Nov 2012, Växjö, Sweden. Proceedings, published by Linköping University Electronic Press, Linköpings universitet, Sweden, pp. 91-94.

Rybacki, Stefan and Himmelspach, Jan and Uhrmacher, Adelinde M. (2012) Using workflows to control the experiment execution in modeling and simulation software. In: 5th International ICST Conference on Simulation Tools and Techniques (SIMUTools 2012), 19-23 Mar 2012, Desenzano del Garda, Italy. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, pp. 93-102.

Helms, Tobias and Rybacki, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2012) An adaptive simulator for ML-rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 390:1-390:2. Poster.

Maus, Carsten and Rybacki, Stefan and Uhrmacher, Adelinde M. (2011) Rule-based multi-level modeling of cell biological systems. BMC Systems Biology, 5 (166), ISSN 1752-0509 (electronic version).

Mazemondet, Orianne and Hübner, Rayk and Frahm, Jana and Koczan, Dirk and Bader, Benjamin and Weiss, Dieter and Uhrmacher, Adelinde M. and Frech, Moritz and Rolfs, Arndt and Luo, Jiankai (2011) Quantitative and kinetic profile of Wnt/β-catenin signaling components during human neural progenitor cell differentiation. Cellular and Molecular Biology Letters, 16 (4), pp. 515-538. ISSN 1689-1392.

Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2011) Exploring the performance of spatial stochastic simulation algorithms. Journal of Computational Physics, 230 (7), pp. 2562-2574. ISSN 0021-9991.

Bittig, Arne T. and Haack, Fiete and Maus, Carsten and Uhrmacher, Adelinde M. (2011) Adapting rule-based model descriptions for simulating in continuous and hybrid space. In: 9th International Conference on Computational Methods in Systems Biology (CMSB 2011), 21-23 Sep 2011, Paris, France. Proceedings, published by ACM, NewYork, USA, pp. 161-170.

Breitling, Rainer and Bruggeman, Frank J. and Priami, Corrado and Uhrmacher, Adelinde M. (2011) Formal Methods in Molecular Biology (Dagstuhl Seminar 11151). Schloss Dagstuhl--Leibniz-Zentrum für Informatik.

Maus, Carsten and Rybacki, Stefan and Uhrmacher, Adelinde M. (2011) Formal Rule-based Multi-Level Modeling. In: 12th International Conference on Systems Biology (ICSB 2011), 28 Aug - 01 Sep, Heidelberg - Mannheim, Germany. Poster.

Wegner, Tim and Gag, Martin and Timmermann, Dirk and Uhrmacher, Adelinde M. (2011) Reduction of Thermal Imbalances and Hot Spots in Networks-on-Chip Using Proactive Temperature Management. In: 5. GI/GMM/ITG-Fachtagung Zuverlässigkeit und Entwurf (ZuE 2011), 27-29 Sep 2011, Hamburg-Harburg, Deutschland. Proceedings, published by VDE Verlag, ITG-Fachbericht (231), pp. 84-91.

Heiner, Monika and Uhrmacher, Adelinde M. (2011) Special Issue on Foundations of formal reconstruction of biochemical networks. ELSEVIER.

Schulz, Hans-Jörg and Uhrmacher, Adelinde M. and Schumann, Heidrun (2011) Visual analytics for stochastic simulation in cell biology. In: 11th International Conference on Knowledge Management and Knowledge Technologies (i-KNOW 2011), 07-09 Sep 2011, Graz, Austria. Proceedings, published by ACM, NewYork, USA, 48:1-48:8.

Rybacki, Stefan and Himmelspach, Jan and Haack, Fiete and Uhrmacher, Adelinde M. (2011) WorMS- a framework to support workflows in M&S. In: Winter Simulation Conference (WSC 2011), 11-14 Dec 2011, Phoenix, AZ, USA. Proceedings, published by IEEE, Online ISSN: 0891-7736, pp. 716-727.

John, Mathias and Lhoussaine, Cédric and Niehren, Joachim and Uhrmacher, Adelinde M. (2010) The Attributed Pi-Calculus with Priorities. Transactions on Computational Systems Biology 12, pp. 13-76.

Himmelspach, Jan and Röhl, Mathias and Uhrmacher, Adelinde M. (2010) Component-Based Models and Simulations for Supporting Valid Multi-Agent System Simulations. Applied Artificial Intelligence, 24 (5), pp. 414-442. ISSN 0883-9514 (print) 1087-6545 (online).

Zinn, Sabine and Gampe, Jutta and Himmelspach, Jan and Uhrmacher, Adelinde M. (2010) A DEVS model for demographic microsimulation. In: Spring Simulation Multiconference (SpringSim 2010), 11-15 Apr 2010, Orlando, Florida, USA. Proceedings, published by Society for Computer Simulation International (SCSI), San Diego, CA, USA, 146:1-146:8.

Uhrmacher, Adelinde M. and Himmelspach, Jan and Ewald, Roland (2010) Effective and Efficient Modeling and Simulation with DEVS Variants. In: Discrete-Event Modeling and Simulation. CRC Press, pp. 139-176. ISBN 978-1-4200-7233-4 (print) 978-1-4200-7234-1 (eBook).

Himmelspach, Jan and Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Enhancing the Scalability of Simulations by Embracing Multiple Levels of Parallelization. In: Second International Workshop on High Performance Computational Systems Biology, 30 Sep - 01 Oct 2010, Twente, The Netherlands. Proceedings, published by IEEE, pp. 57-66.

Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics, 11 (3), pp. 290-300. ISSN 1467-5463.

Steiniger, Alexander and Uhrmacher, Adelinde M. (2010) Modeling and simulation for user assistance in smart environments. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 490-499.

Leye, Stefan and Mazemondet, Orianne and Uhrmacher, Adelinde M. (2010) Parallel Analysis with FAMVal to Speed Up Simulation-based Model Checking. In: Fourth UKSim European Symposium on Computer Modeling and Simulation (EMS 2010), 17-19 Nov 2010, Pisa, Italy. Proceedings, published by IEEE, pp. 344-350.

Ewald, Roland and Schulz, Rene and Uhrmacher, Adelinde M. (2010) Selecting Simulation Algorithm Portfolios by Genetic Algorithms. In: 24th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2010), 17-19 May 2010, Atlanta, Georgia, USA. Proceedings, published by IEEE, Print ISSN: 1087-4097, pp. 48-56.

Bittig, Arne T. and Uhrmacher, Adelinde M. (2010) Spatial modeling in cell biology at multiple levels. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEE, Electronic ISSN: 1558-4305, pp. 608-619.

Bittig, Arne T. and Jeschke, Matthias and Uhrmacher, Adelinde M. (2010) Towards Modelling and Simulation of Crowded Environments in Cell Biology. In: International Conference of Numerical Analysis and Applied Mathematics (ICNAAM 2010), 19-25 Sep 2010, Rhodes, Greece. Proceedings, published by AIP Conference Proceedings, 1281(1), pp. 1326-1329.

Maus, Carsten and John, Mathias and Rybacki, Stefan and Uhrmacher, Adelinde M. (2010) Towards Rule-Based Multi-Level Modeling. In: 11th International Conference on Systems Biology (ICSB 2010), 10-15 Oct 2010, Edinburgh, UK. Poster.

Rybacki, Stefan and Himmelspach, Jan and Seib, Enrico and Uhrmacher, Adelinde M. (2010) Using workflows in M&S software. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 535-545.

Leye, Stefan and Uhrmacher, Adelinde M. (2010) A flexible and extensible architecture for experimental model validation. In: 3rd International Conference on Simulation Tools and Techniques (SIMUTOOLS 2010), 15-19 Mar 2010, Torremolinos, Malaga, Spain. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 65:1-65:10.

Haack, Fiete and Leye, Stefan and Uhrmacher, Adelinde M. (2010) A flexible architecture for modeling and simulation of diffusional association. In: 3rd Workshop From Biology To Concurrency and back, FBTC 2010, 27 Mar 2010, Paphos, Cyprus. Proceedings, published by Electronic Proceedings in Theoretical Computer Science (EPTCS), 19, pp. 70-84.

Leye, Stefan and John, Mathias and Uhrmacher, Adelinde M. (2010) A flexible architecture for performance experiments with the pi-Calculus and its extensions. In: 3rd International Conference on Simulation Tools and Techniques (SIMUTOOLS 2010), 15-19 Mar 2010, Torremolinos, Malaga, Spain. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 35:1-35:10.

Marquardt, Florian and Uhrmacher, Adelinde M. (2009) An AI-Planning based Service Composition Architecture for Ambient Intelligence. In: Workshops Proceedings of the 5th International Conference on Intelligent Environments, Barcelona, Spain, 19th of July, 2009. Proceedings,, pp. 145-152.

Tolk, Andreas and Uhrmacher, Adelinde M. (2009) Agents: Agenthood, Agent Architectures, and Agent Taxonomies. In: Agent-Directed Simulation and Systems Engineering. Wiley-VCH Verlag GmbH & Co. KGaA, pp. 73-109. ISBN Print ISBN: 9783527407811 Online ISBN: 9783527627783.

Ewald, Roland and Uhrmacher, Adelinde M. (2009) Automating the Runtime Performance Evaluation of Simulation Algorithms. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1079-1091.

Uhrmacher, Adelinde M. and John, Mathias and Mazemondet, Orianne and Unger, Andrea and Rharass, Tareck and Bader, Benjamin and Rolfs, Arndt (2009) Computer Science Meets Cell Biology - GRK dIEM oSiRiS. University of Rostock.

Marquardt, Florian and Uhrmacher, Adelinde M. (2009) Creating AI Planning Domains for Smart Environments Using PDDL. In: International Conference on Intelligent Interactive Assistance and Mobile Multimedia Computing IMC 2009), November 9-11, Rostock-Warnemünde, Germany. Proceedings,, pp. 263-274.

Ewald, Roland and Uhrmacher, Adelinde M. and Saha, Kaustav (2009) Data mining for simulation algorithm selection. In: 2nd International Conference on Simulation Tools and Techniques for Communications, Networks and Systems (SimuTools 2009), 02-06 Mar, Rome, Italy. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 14:1-14:10.

Leye, Stefan and Himmelspach, Jan and Uhrmacher, Adelinde M. (2009) A Discussion on Experimental Model Validation. In: Proceedings of the UKSim'11, International Conference on Computer Modelling and Simulation, March 25-27, Cambridge, UK. Proceedings,, pp. 161-167.

Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2009) An Efficient and Adaptive Mechanism for Parallel Simulation Replication. In: 23rd Workshop on Principles of Advanced and Distributed Simulation (PADS 2009), 22-25 Jun 2010, Lake Placid, New York, USA. Proceedings, published by IEEE, pp. 104-113.

Wang, Bing and Himmelspach, Jan and Ewald, Roland and Yao, Yiping and Uhrmacher, Adelinde M. (2009) Experimental Analysis of Logical Process Simulation Algorithms in JAMES II. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1167-1179.

Rybacki, Stefan and Himmelspach, Jan and Uhrmacher, Adelinde M. (2009) Experiments with Single Core, Multi-core, and GPU Based Computation of Cellular Automata. In: 2009 First International Conference on Advances in System Simulation (SIMUL 2009), September 20-25, Porto, Portugal. Proceedings,, pp. 62-67.

Mazemondet, Orianne and John, Mathias and Maus, Carsten and Uhrmacher, Adelinde M. and Rolfs, Arndt (2009) Integrating Diverse Reaction Types into Stochastic Models - A Signaling Pathway Case Study in the Imperative π-Calculus. In: Winter Simulation Conference, WSC 2009, December 13-16, Austin, TX, USA. Proceedings,, pp. 932-943.

John, Mathias and Schulz, Hans-Jörg and Schumann, Heidrun and Uhrmacher, Adelinde M. and Unger, Andrea (2009) Interactive Poster: Exploring Time-Varying Hypergraphs. In: InfoVis 2009, October 11-16, Atlantic City, NJ, USA. Poster.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2009) The JAMES II Framework for Modeling and Simulation. In: 2009 International Workshop on High Performance Computational Systems Biology (HiBi 2009), October 14-16, Trento, Italy. Proceedings,, pp. 101-102.

Zinn, Sabine and Himmelspach, Jan and Gampe, Jutta and Uhrmacher, Adelinde M. (2009) MIC-core: A Tool for Microsimulation. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 992-1002.

Gampe, Jutta and Zinn, Sabine and Willekens, Frans and van der Gaag, Nicole and de Beer, Joop and Himmelspach, Jan and Uhrmacher, Adelinde M. (2009) The Microsimulation Tool of the MicMac-Project. In: The 2nd General Conference of the International Microsimulation Association, June 8-10, Ottawa, Canada.

Mazemondet, Orianne and John, Mathias and Maus, Carsten and Uhrmacher, Adelinde M. and Rolfs, Arndt (2009) Modeling the Cell Cycle Dependency of the Wnt/β-catenin Signaling Pathway in the Imperative π-Calculus. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.

Plociennik, Christiane and Burghardt, Christoph and Marquardt, Florian and Kirste, Thomas and Uhrmacher, Adelinde M. (2009) Modelling Device Actions in Smart Environments. In: International Conference on Intelligent Interactive Assistance and Mobile Multimedia Computing IMC 2009), November 9-11, Rostock-Warnemünde, Germany. Proceedings,, pp. 213-224.

Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2009) Performance Issues in Evaluating Models and Designing Simulation Algorithms. In: International Workshop on High Performance Computational Systems Biology (HiBi 2009), 14-16 Oct 2010, Trento, Italy. Proceedings, published by IEEE, pp. 71-80.

Bohk, Christina and Ewald, Roland and Uhrmacher, Adelinde M. (2009) Probabilistic Population Projection with JAMES II. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 2008-2019.

Uhrmacher, Adelinde M. and Schulz, Hans-Jörg and Schumann, Heidrun and Schwabe, Lars and Timmermann, Dirk (2009) Regenerative systems: challenges and opportunities for modeling, simulation, and visualization. In: 4th International Conference on Performance Evaluation Methodologies and Tools, VALUETOOLS '09, Pisa, Italy, October 20-22, 2009. Proceedings,, p. 45.

Maus, Carsten and Jeschke, Matthias and Uhrmacher, Adelinde M. (2009) Spatial Multi-Level Modelling and Simulation for Systems Biology. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.

Marquardt, Florian and Uhrmacher, Adelinde M. (2009) Toward Unobtrusive Service Composition in Smart Environments based on AI Planning. In: 23th Workshop Planning, Scheduling, Design, and Configuration (PuK 2009), September 15-18, Paderborn, Germany. Proceedings,, pp. 228-239.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2009) What contributes to the quality of simulation results? In: 2009 INFORMS Simulation Society Research Workshop, June 25-27, Coventry, U.K. Proceedings,, pp. 125-129.

Wang, Bing and Himmelspach, Jan and Ewald, Roland and Yao, Yiping and Uhrmacher, Adelinde M. (2009) An experimental analysis environment for logical process simulation algorithms. In: 2nd International Conference on Simulation Tools and Techniques for Communications, Networks and Systems (SimuTools 2009), 02-06 Mar, Rome, Italy. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 40:1-40:2.

Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. (2008) An Algorithm Selection Approach for Simulation Systems. In: 22nd International Workshop on Principles of Advanced and Distributed Simulation, PADS 2008, June 3-6, Rome, Italy. Proceedings,, pp. 91-98.

John, Mathias and Lhoussaine, Cédric and Niehren, Joachim and Uhrmacher, Adelinde M. (2008) The Attributed Pi Calculus. In: 6th International Conference on Computational Methods in Systems Biology, CMSB 2008, October 12-15, Rostock, Germany. Proceedings,, pp. 83-102.

Leye, Stefan and Uhrmacher, Adelinde M. and Priami, Corrado (2008) A Bounded-Optimistic, Parallel Beta-Binders Simulator. In: 12th IEEE/ACM International Symposium on Distributed Simulation and Real-Time Applications, 2008, October 27-29, Vancouver, BC, Canada. Proceedings,, pp. 139-148.

Himmelspach, Jan and Röhl, Mathias and Uhrmacher, Adelinde M. (2008) Component-based models and simulation experiments for multi-agent systems in James II. In: 6th International Workshop: From Agent Theory to Agent Implementation, May 13, Estoril, Portugal. Proceedings,, pp. 83-92.

Chen, Dan and Ewald, Roland and Theodoropoulos, Georgios K. and Minson, Rob and Oguara, Ton and Lees, Michael and Logan, Brian S. and Uhrmacher, Adelinde M. (2008) Data access in distributed simulations of multi-agent systems. Journal of Systems and Software, 81 (12), pp. 2345-2360.

Röhl, Mathias and Uhrmacher, Adelinde M. (2008) Definition and analysis of composition structures for discrete-event models. In: Winter Simulation Conference, WSC 2008, December 7-10, Miami, Florida, USA. Proceedings,, pp. 942-950.

Marquardt, Florian and Uhrmacher, Adelinde M. (2008) Evaluating AI planning for service composition in smart environments. In: Proceedings of the 7th International Conference on Mobile and Ubiquitous Multimedia, MUM 2008, Umeå, Sweden, December 3-5, 2008. Proceedings,, pp. 48-55.

Leye, Stefan and Himmelspach, Jan and Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A Grid-Inspired Mechanism for Coarse-Grained Experiment Execution. In: 12th IEEE/ACM International Symposium on Distributed Simulation and Real-Time Applications, 2008, October 27-29, Vancouver, BC, Canada. Proceedings,, pp. 7-16.

Maus, Carsten and John, Mathias and Röhl, Mathias and Uhrmacher, Adelinde M. (2008) Hierarchical Modeling for Computational Biology. In: Formal Methods for Computational Systems Biology, 8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems, Advanced Lectures, June 2-7, Bertinoro, Italy. Proceedings,, pp. 81-124.

Jeschke, Matthias and Uhrmacher, Adelinde M. (2008) Multi-resolution spatial simulation for molecular crowding. In: Winter Simulation Conference, WSC 2008, December 7-10, Miami, Florida, USA. Proceedings,, pp. 1384-1392.

Uhrmacher, Adelinde M. and Himmelspach, Jan and Jeschke, Matthias and John, Mathias and Leye, Stefan and Maus, Carsten and Röhl, Mathias and Ewald, Roland (2008) One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II. In: 1st International Workshop Formal Methods in Systems Biology, FMSB 2008, June 4-5, Cambridge, UK. Proceedings,, pp. 123-138.

Jeschke, Matthias and Park, Alfred and Ewald, Roland and Fujimoto, Richard and Uhrmacher, Adelinde M. (2008) Parallel and Distributed Spatial Simulation of Chemical Reactions. In: 22st International Workshop on Principles of Advanced and Distributed Simulation, PADS 2008, June 3-6, Roma, Italy. Proceedings,, pp. 51-59.

Reisse, Christiane and Burghardt, Christoph and Marquardt, Florian and Kirste, Thomas and Uhrmacher, Adelinde M. (2008) Smart environments meet the semantic web. In: Proceedings of the 7th International Conference on Mobile and Ubiquitous Multimedia, MUM 2008, Umeå, Sweden, December 3-5, 2008. Proceedings,, pp. 88-91.

John, Mathias and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A Spatial Extension to the π Calculus. Electr. Notes Theor. Comput. Sci., 194 (3), pp. 133-148.

Klan, Friederike and Röhl, Mathias and König-Ries, Birgitta and Uhrmacher, Adelinde M. (2008) Using context information to evaluate cooperativeness. In: Q2SWinet'08 - Proceedings of the 4th ACM Workshop on Q2S and Security for Wireless and Mobile Networks, Vancouver, British Columbia, Canada, October 27-28, 2008. Proceedings,, pp. 98-105.

Himmelspach, Jan and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A flexible and scalable experimentation layer. In: Winter Simulation Conference, WSC 2008, December 7-10, Miami, Florida, USA. Proceedings,, pp. 827-835.

Jeschke, Matthias and Ewald, Roland and Park, Alfred and Fujimoto, Richard and Uhrmacher, Adelinde M. (2008) A parallel and distributed discrete event approach for spatial cell-biological simulations. SIGMETRICS Performance Evaluation Review, 35 (4), pp. 22-31.

Ewald, Roland and Rossel, Johannes and Himmelspach, Jan and Uhrmacher, Adelinde M. (2008) A plug-in-based architecture for random number generation in simulation systems. In: Proceedings of the 2008 Winter Simulation Conference, Global Gateway to Discovery, WSC 2008, InterContinental Hotel, Miami, Florida, USA, December 7-10, 2008. Proceedings,, pp. 836-844.

Röhl, Mathias and Uhrmacher, Adelinde M. (2007) Agent-Oriented Modeling in Simulation: Agents for Modeling, and Modeling for Agents. In: Handbook of Dynamic System Modeling. Computer ana Information Science . Chapman & Hall/CRC, pp. 8-1. ISBN 978-1-58488-565-8 (print) 978-1-4200-1085-5 (eBook).

Ewald, Roland and Maus, Carsten and Rolfs, Arndt and Uhrmacher, Adelinde M. (2007) Discrete event modelling and simulation in systems biology. Journal of Simulation, 1 (2), pp. 81-96. ISSN 1747-7778.

Hoffrogge, Raimund and Beyer, Susanne and Hübner, Rayk and Mikkat, Stefan and Mix, Eilhard and Scharf, Christian and Schmitz, Ulf and Pauleweit, Stefan and Berth, Matthias and Zubrzycki, Igor Z. and Christoph, Hilmar and Pahnke, Jens and Wolkenhauer, Olaf and Uhrmacher, Adelinde M. and Völker, Uwe and Rolfs, Arndt (2007) 2-DE profiling of GDNF overexpression-related proteome changes in differentiating ST14A rat progenitor cells. PROTEOMICS, 7 (1), pp. 33-46. ISSN 16159853.

Uhrmacher, Adelinde M. and Ewald, Roland and John, Mathias and Maus, Carsten and Jeschke, Matthias and Biermann, Susanne (2007) Combining micro and macro-modeling in DEVS for computational biology. In: Proceedings of the Winter Simulation Conference, WSC 2007, Washington, DC, USA, December 9-12, 2007. Proceedings,, pp. 871-880.

Uhrmacher, Adelinde M. and Rolfs, Arndt and Frahm, Jana (2007) DFG Research Training Group 1387/1: dIEM oSiRiS - Integrative Development of Modelling and Simulation Methods for Regenerative Systems (DFG Graduiertenkolleg 1387/1: dIEM oSiRiS - Die integrative Entwicklung von Modellierungs- und Simulationsmethoden für regenerative Systeme). DE GRUYTER Oldenbourg.

Röhl, Mathias and Uhrmacher, Adelinde M. and König-Ries, Birgitta (2007) An Experimental Frame for Evaluating Service Trading Overlays in Mobile ad-hoc Networks. In: MMS 2007: Mobilität und mobile Informationssysteme, 2nd conference of GI-Fachgruppe MMS, March 6th, 2007, Aachen, Germany. Proceedings,, pp. 37-48.

Röhl, Mathias and Marquardt, Florian and Uhrmacher, Adelinde M. (2007) Exploiting web service techniques for composing simulation models. In: Proceedings of the Winter Simulation Conference, WSC 2007, Washington, DC, USA, December 9-12, 2007. Proceedings,, pp. 833-841.

Ewert, Ulf Christian and Röhl, Mathias and Uhrmacher, Adelinde M. (2007) Hunger and market dynamics in pre-modern communities : insights into the effects of market intervention from a multi-agent model. Historical Social Research, 32 (4), pp. 122-150. ISSN 0172-6404.

Helleboogh, Alexander and Vizzari, Giuseppe and Uhrmacher, Adelinde M. and Michel, Fabien (2007) Modeling dynamic environments in multi-agent simulation. Autonomous Agents and Multi-Agent Systems, 14 (1), pp. 87-116.

Uhrmacher, Adelinde M. (2007) Multiple Scales and Perspectives for Modeling and Simulation in Life Science Automation. In: 5th International Forum Live Science Automation 2007, October 28th - 30th, Lansdowne, VA, USA.

Leye, Stefan and Priami, Corrado and Uhrmacher, Adelinde M. (2007) A Parallel Beta-binders Simulator. Technical Report. The Microsoft Research - University of Trento, Centre for Computational and Systems Biology.

Himmelspach, Jan and Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2007) Parallel and distributed simulation of parallel DEVS models. In: Spring Simulation Conference (SpringSim'07), March 25-29, Norfolk, Virginia, USA. Proceedings,, pp. 249-256.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2007) Plug'n Simulate. In: Proceedings 40th Annual Simulation Symposium (ANSS-40 2007), 26-28 March 2007, Norfolk, Virginia, USA. Proceedings,, pp. 137-143.

Unger, Andrea and Biermann, Susanne and John, Mathias and Uhrmacher, Adelinde M. and Schumann, Heidrun (2007) Visual support for modeling and simulation of cell biological systems. In: Proceedings of the Winter Simulation Conference, WSC 2007, Washington, DC, USA, December 9-12, 2007. Proceedings,, p. 2378.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2007) The event queue problem and PDevs. In: Spring Simulation Conference (SpringSim'07), March 25-29, Norfolk, Virginia, USA. Proceedings,, pp. 257-264.

Uhrmacher, Adelinde M. and Kuttler, Céline (2006) Multi-Level Modeling in Systems Biology by Discrete Event Approaches (Mehrebenen-Modellierung in der Systembiologie innerhalb diskret-ereignisbasierter Ansätze). DE GRUYTER Oldenbourg.

Nicol, David M. and Priami, Corrado and Nielson, Hanne Riis and Uhrmacher, Adelinde M. (2006) 06161 Abstracts Collection — Simulation and Verification of Dynamic Systems. In: Simulation and Verification of Dynamic Systems, 17.04. - 22.04.2006.

Nielson, Hanne Riis and Nicol, David M. and Priami, Corrado and Uhrmacher, Adelinde M. (2006) 06161 Executive Summary — Simulation and Verification of Dynamic Systems. In: Simulation and Verification of Dynamic Systems, 17.04. - 22.04.2006.

Batt, Grégory and Bradley, Jeremy T. and Ewald, Roland and Fages, François and Hermanns, Holger and Hillston, Jane and Kemper, Peter and Martens, Alke and Mosterman, Pieter J. and Nielson, Flemming and Sokolsky, Oleg and Uhrmacher, Adelinde M. (2006) 06161 Working Groups' Report: The Challlenge of Combining Simulation and Verification. In: Simulation and Verification of Dynamic Systems, 17.04. - 22.04.2006.

Hoffrogge, Raimund and Beyer, Susanne and Völker, Uwe and Uhrmacher, Adelinde M. and Rolfs, Arndt (2006) 2-DE Proteomic Profiling of Neuronal Stem Cells. Neurodegenerative Diseases, 3 (1-2), pp. 112-121. ISSN 1660-2854.

Hoffrogge, Raimund and Mikkat, Stefan and Scharf, Christian and Beyer, Susanne and Christoph, Hilmar and Pahnke, Jens and Mix, Eilhard and Berth, Matthias and Uhrmacher, Adelinde M. and Zubrzycki, Igor Z. and Miljan, Erik and Völker, Uwe and Rolfs, Arndt (2006) 2-DE proteome analysis of a proliferating and differentiating human neuronal stem cell line (ReNcell VM). PROTEOMICS, 6 (6), pp. 1833-1847. ISSN 1615-9853.

Sauro, Herbert M. and Harel, David and Kwiatkowska, Marta Z. and Shaffer, Clifford A. and Uhrmacher, Adelinde M. and Hucka, Michael and Mendes, Pedro and Strömbäck, Lena and Tyson, John J. (2006) Challenges for modeling and simulation methods in systems biology. In: Proceedings of the Winter Simulation Conference WSC 2006, Monterey, California, USA, December 3-6, 2006. Proceedings,, pp. 1720-1730.

Röhl, Mathias and Uhrmacher, Adelinde M. (2006) Composing simulations from XML-specified model components. In: Proceedings of the Winter Simulation Conference WSC 2006, Monterey, California, USA, December 3-6, 2006. Proceedings,, pp. 1083-1090.

Himmelspach, Jan and Lecca, Paola and Prandi, Davide and Priami, Corrado and Quaglia, Paola and Uhrmacher, Adelinde M. (2006) Developing An Hierarchical Simulator for Beta-binders. In: 20th IEEE/ACM/SCS Workshop on Principles of Advanced and Distributed Simulation, PADS 2006, Singapore, May 23-26, 2006. Proceedings,, pp. 92-102.

Paul, Björn and Himmelspach, Jan and Theeck, Wolfgang and Uhrmacher, Adelinde M. (2006) An Efficient and Effective Partitioning Algorithm for Air Traffic Management. In: International Mediterranean Modeling Multiconference (I3M), October 4-6 2006, Barcelona, Spain. Proceedings,, pp. 373-378.

Uhrmacher, Adelinde M. and Himmelspach, Jan and Röhl, Mathias and Ewald, Roland (2006) Introducing variable ports and multi-couplings for cell biological modeling in DEVS. In: Winter Simulation Conference, WSC 2006, December 3-6, Monterey, California, USA. Proceedings,, pp. 832-840.

Gierke, Martina and Himmelspach, Jan and Röhl, Mathias and Uhrmacher, Adelinde M. (2006) Modeling and Simulation of Tests for Agents. In: Multiagent System Technologies, 4th German Conference, MATES 2006, Erfurt, Germany, September 19-20, 2006, Proceedings. Proceedings,, pp. 49-60.

Uhrmacher, Adelinde M. (2006) Multi-Level Modeling and Simulation in Systems Biology — Promises and Challenges. In: 10th IEEE International Symposium on Distributed Simulation and Real-Time Applications (DS-RT 2006), 2-4 October 2006, Malaga, Spain. Proceedings,, p. 95.

Ewald, Roland and Gutzeit, Enrico and Schwanke, Sebastian and Uhrmacher, Adelinde M. and Lange, Christian and Biermann, Susanne and Maus, Carsten (2006) Multi-Level Modeling with DEVS - A Critical Inspection and Steps Towards a Feasible Approach. In: Winter Simulation Conference 2006 (WSC'2006), December 03-06, Monterey, CA, USA. Poster.

Ewald, Roland and Chen, Dan and Theodoropoulos, Georgios K. and Lees, Michael and Logan, Brian S. and Oguara, Ton and Uhrmacher, Adelinde M. (2006) Performance Analysis of Shared Data Access Algorithms for Distributed Simulation of Multi-Agent Systems. In: 20th IEEE/ACM/SCS Workshop on Principles of Advanced and Distributed Simulation, PADS 2006, Singapore, May 23-26, 2006. Proceedings,, pp. 29-36.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2006) Sequential processing of PDEVS models. In: International Mediterranean Modeling Multiconference (I3M), October 4-6 2006, Barcelona, Spain. Proceedings,, pp. 239-244.

Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. and Chen, Dan and Theodoropoulos, Georgios K. (2006) A Simulation Approach to Facilitate Parallel and Distributed Discrete-Event Simulator Development. In: 10th IEEE International Symposium on Distributed Simulation and Real-Time Applications (DS-RT 2006), 2-4 October 2006, Malaga, Spain. Proceedings,, pp. 209-218.

Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. (2006) A non-fragmenting partitioning algorithm for hierarchical models. In: Proceedings of the Winter Simulation Conference WSC 2006, Monterey, California, USA, December 3-6, 2006. Proceedings,, pp. 848-855.

Uhrmacher, Adelinde M. and Degenring, Daniela and Zeigler, Bernard P. (2005) Discrete Event Multi-level Models for Systems Biology. Trans. Computational Systems Biology, 1, pp. 66-89.

Uhrmacher, Adelinde M. and Priami, Corrado (2005) Discrete Event Systems Specification in Systems Biology - A Discussion of Stochastic Pi calculius and DEVS. In: Winter Simulation Conference (WSC'2005), December 4-7, Orlando, FL, USA. Proceedings,, pp. 317-326.

Röhl, Mathias and Uhrmacher, Adelinde M. (2005) Flexible integration of XML into modeling and simulation systems. In: Proceedings of the 37th Winter Simulation Conference, Orlando, FL, USA, December 4-7, 2005. Proceedings,, pp. 1813-1820.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2004) A Component-Based Simulation Layer for JAMES. In: 18th Workshop on Parallel and Distributed Simulation, PADS 2004, Kufstein, Austria, May 16-19, 2004. Proceedings,, pp. 115-122.

Röhl, Mathias and Uhrmacher, Adelinde M. (2004) Controlled Experimentation with Agents - Models and Implementations. In: International Workshop on Engineering Societies in the Agents World V (ESAW 2004), October 20-22, Toulouse, France. Proceedings,, pp. 292-304.

Martens, Alke and Uhrmacher, Adelinde M. (2004) A Formal Tutoring Process Model for Intelligent Tutoring Systems. In: Proceedings of the 16th Eureopean Conference on Artificial Intelligence, ECAI'2004, including Prestigious Applicants of Intelligent Systems, PAIS 2004, Valencia, Spain, August 22-27, 2004. Proceedings,, pp. 124-128.

Martens, Alke and Uhrmacher, Adelinde M. (2004) Modeling of Tutoring Processes in Intelligent Tutoring Systems. In: KI 2004: Advances in Artificial Intelligence, 27th Annual German Conference on AI, KI 2004, Ulm, Germany, September 20-24, 2004, Proceedings. Proceedings,, pp. 396-409.

Himmelspach, Jan and Uhrmacher, Adelinde M. (2004) Processing Dynamic PDEVS Models. In: 12th International Workshop on Modeling, Analysis, and Simulation of Computer and Telecommunication Systems (MASCOTS 2004), 4-8 October 2004, Vollendam, The Netherlands. Proceedings,, pp. 329-336.

Uhrmacher, Adelinde M. and Degenring, Daniela and Lemcke, Jens and Krahmer, Mario (2004) Towards Reusing Model Components in Systems Biology. In: Computational Methods in Systems Biology, International Conference, CMSB 2004, Paris, France, May 26-28, 2004, Revised Selected Papers. Proceedings,, pp. 192-206.

Uhrmacher, Adelinde M. and Swartout, William (2003) Agent-Oriented Simulation. In: Applied System Simulation: Methodologies and Applications. Springer US, pp. 215-239. ISBN 978-1-4613-4843-6 (print) 978-1-4419-9218-5(online).

Degenring, Daniela and Röhl, Mathias and Uhrmacher, Adelinde M. (2003) Discrete Event Simulation for a Better Understanding of Metabolite Channeling - A System Theoretic Approach. In: Computational Methods in Systems Biology, First International Workshop, CMSB 2003, Roverto, Italy, February 24-26, 2003, Proceedings. Proceedings,, pp. 114-126.

Cho, Kwang-Hyun and Uhrmacher, Adelinde M. and Wolkenhauer, Olaf (2003) Introduction to the Special Issue on Systems Biology and Simulation. SAGE Publisching.

Himmelspach, Jan and Röhl, Mathias and Uhrmacher, Adelinde M. (2003) Next generation modeling III - agents: simulation for testing software agents - an exploration based on James. In: Proceedings of the 35th Winter Simulation Conference: Driving Innovation, New Orleans, Louisiana, USA, December 7-10, 2003. Proceedings,, pp. 799-807.

Martens, Alke and Uhrmacher, Adelinde M. (2002) Adapting Learner Evaluation by Plans. In: Adaptive Hypermedia and Adaptive Web-Based Systems, Second International Conference, AH 2002, Malaga, Spain, May 29-31, 2002, Proceedings. Proceedings,, pp. 539-542.

Martens, Alke and Uhrmacher, Adelinde M. (2002) Adaptive Tutoring Processes and Mental Plans. In: Intelligent Tutoring Systems, 6th International Conference, ITS 2002, Biarritz, France and San Sebastian, Spain, June 2-7, 2002, Proceedings. Proceedings,, pp. 71-80.

Uhrmacher, Adelinde M. and Röhl, Mathias and Kullick, Bernd G. (2002) The Role Of Reflection In Simulating And Testing Agents: An Exploration Based On The Simulation System James. Applied Artificial Intelligence, 16 (9-10), pp. 795-811.

Uhrmacher, Adelinde M. (2002) Simulation for agent-oriented software engineering. In: First International Conference on Grand Challenges for Modelling and Simulation, 27-31 Jan 2002, San Antonio, TX, USA.

Uhrmacher, Adelinde M. (2001) Dynamic structures in modeling and simulation: a reflective approach. ACM Trans. Model. Comput. Simul., 11 (2), pp. 206-232.

Uhrmacher, Adelinde M. and Kullick, Bernd G. (2001) Interacting multi-agent and simulation systems: an exploration into mole and james. In: AGENTS '01 Proceedings of the fifth international conference on Autonomous agents, May 28. - June 01. 2001, Montreal, Canada. Proceedings,, pp. 122-123.

Schattenberg, Bernd and Uhrmacher, Adelinde M. (2001) Planning agents in JAMES. Proceedings of the IEEE, 89 (2), pp. 158-173. ISSN 00189219.

Ewert, Ulf Christian and Röhl, Mathias and Uhrmacher, Adelinde M. (2001) The Role of Deliberative Agents in Analyzing Crises Management in Pre-modern Towns. Sozionik, 3 (5), 5:1-5:15.

Uhrmacher, Adelinde M. and Fishwick, Paul A. and Zeigler, Bernard P. (2001) Special Issue on Agents in Modeling and Simulation: Exploiting the Metaphor. Institute of Electrical and Electronics Engineers ( IEEE ).

Uhrmacher, Adelinde M. (2001) A System Theoretic Approach to Constructing Test Beds for Multi-Agent Systems. In: Discrete Event Modeling and Simulation Technologies.A Tapestry of Systems and AI-Based Theories and Methodologies. Springer-Verlag New York, pp. 315-339. ISBN 978-1-4419-2868-9 (Print) 978-1-4757-3554-3 (Online).

Uhrmacher, Adelinde M. and Seitz, Alexander (2000) Case-based simulation of ecological and biological systems. Systems Analysis Modelling Simulation - Special issue on tools for model conceptualisation and simulation for environment analyses, 39 (2), pp. 215-234. ISSN 0232-9298.

Ören, Tuncer I. and Numrich, Susan K. and Uhrmacher, Adelinde M. and Wilson, Linda F. and Gelenbe, Erol (2000) Agent-directed simulation: challenges to meet defense and civilian requirements. In: Proceedings of the 32nd conference on Winter simulation, WSC 2000, Wyndham Palace Resort & Spa, Orlando, FL, USA, December 10-13, 2000. Proceedings,, pp. 1757-1762.

Uhrmacher, Adelinde M. (2000) Agentenorientierte Simulation. In: Modellierung, Simulation und Künstliche Intelligenz. SCS-Europe, pp. 15-45. ISBN 978-1565551282.

Uhrmacher, Adelinde M. and Gugler, Karsten (2000) Distributed, parallel simulation of multiple, deliberative agents. In: Proceedings of the 14th Workshop on Parallel and Distributed Simulation, PADS 2000, Bologna, Italy, May 28-31, 2000. Proceedings,, pp. 101-108.

Martens, Alke and Uhrmacher, Adelinde M. (2000) How to Execute a Tutoring Process. In: Annual Conference on Artificial Intelligence, Simulation and Planning in High Autonomy Systems, March 6-8, Tucson, AZ, USA. Proceedings,, pp. 114-122.

Uhrmacher, Adelinde M. and Tyschler, Petra and Tyschler, Dirk (2000) Modeling and simulation of mobile agents. Future Generation Comp. Syst., 17 (2), pp. 107-118.

Uhrmacher, Adelinde M. and Kullick, Bernd G. (2000) "Plug and test": software agents in virtual environments. In: Proceedings of the 32nd conference on Winter simulation, WSC 2000, Wyndham Palace Resort & Spa, Orlando, FL, USA, December 10-13, 2000. Proceedings,, pp. 1722-1729.

Seitz, Alexander and Uhrmacher, Adelinde M. and Damm, Daniela (1999) Case-based prediction in experimental medical studies. Artificial Intelligence in Medicine, 15 (3), pp. 255-273.

Martens, Alke and Uhrmacher, Adelinde M. (1999) Modeling Tutoring As A Dynamic Process -- A Discrete Event Simulation Approach. In: European Simulation Multiconference ESM'99, June 1-4, Warsaw, Poland. Proceedings,, pp. 111-119.

Uhrmacher, Adelinde M. and Schattenberg, Bernd (1998) Agents in Discrete Event Simulation. In: ESS'98 10th European Simulation Symposium, October 26-28, Nottingham, UK. Proceedings,, pp. 129-136.

Uhrmacher, Adelinde M. and Tyschler, Petra and Tyschler, Dirk (1998) Modeling Mobile Agents. In: 1998 International Conference on Web-Based Modeling and Simulation, January 11-14, San Diego, CA, USA. Proceedings,, pp. 15-20.

Seitz, Alexander and Uhrmacher, Adelinde M. (1998) The Treatment of Time in a Case-Based Analysis of Experimental Medical Studies. In: KI-98: Advances in Artificial Intelligence, 22nd Annual German Conference on Artificial Intelligence, Bremen, Germany, September 15-17, 1998, Proceedings. Proceedings,, pp. 213-223.

Uhrmacher, Adelinde M. and Cellier, François E. and Frye, R.J. (1997) Applying fuzzy-based inductive reasoning to analyze qualitatively the dynamic behavior of an ecological system. AI Applications, 11 (2), pp. 1-10. ISSN 1051-8266.

Uhrmacher, Adelinde M. (1997) Concepts of Object- and Agent-Oriented Simulation. Transactions of the Society for Computer Simulation International, 14 (2), pp. 59-67. ISSN 0740-6797.

Seitz, Alexander and Uhrmacher, Adelinde M. (1996) Fälle statt Modellwissen - Eine Anwendung auf dem Gebiet der Knochenheilung. In: 4th German Workshop on Case-Based Reasoning, März 20.-22. Proceedings,, pp. 178-186.

Uhrmacher, Adelinde M. (1996) Object-Oriented and Agent-Oriented Simulation: Implications for Social Science Application. In: Social Science Microsimulation. Chapter 20. Springer, Berlin Heidelberg, pp. 432-447. ISBN 978-3-540-61572-9.

Uhrmacher, Adelinde M. and Zeigler, Bernard P. (1996) Variable Structure Models In Object-oriented Simulation. International Journal of General Systems, 24 (4), pp. 359-375. ISSN 0308-1079.

Uhrmacher, Adelinde M. (1995) Reasoning about changing structure: a modeling concept for ecological systems. Applied Artificial Intelligence, 9 (2), pp. 157-180.

Uhrmacher, Adelinde M. and Arnold, R (1994) Distributing and maintaining knowledge: agents in variable structure environments. In: The 5th Annual Conference on AI, Simulation and Planning in High Autonomy Systems - Distributed Interactive Simulation Environments, December 07-09, Gainesville,FL, USA. Proceedings,, pp. 178-184.

Uhrmacher, Adelinde M. (1994) Fuzzy-basiertes Induktives Schliessen - Eine Analyse der Kohlendioxiddynamik in Biosphäre 2. In: GI-Fachgruppe Maschinelles Lernen. Proceedings,, pp. 95-104.

Uhrmacher, Adelinde M. (1993) Variable structure models: autonomy and control answers from two different modeling approaches. In: The 4th Annual Conference on AI, Simulation and Planning in High Autonomy Systems - Integrating Virtual Reality and Model-Based Environments, September 20-22, Tucson, AZ, USA. Proceedings,, pp. 133-139.

Uhrmacher, Adelinde M. (1992) EMSY - Ein Modellierungskonzept für ökologische und biologische Systeme unter besonderer Berücksichtigung ihrer dynamischen Veränderung. DISKI (20). Infix Verlag, Bonn St. Augustin. ISBN 3-929037-20-3.

Uhrmacher, Adelinde M. (1992) EMSY-An Extended Modeling System. In: Artificial Intelligence, Expert Systems and Symbolic Computing. North Holland, Amsterdam, pp. 399-407. ISBN 978-0444568359.

Uhrmacher, Adelinde M. (1992) Qualitative and Quantitative Simulation - Some Comparative Aspects. In: The 6th Conference on the Scientific Use of Statistical Software, April 7-12 1991, Heidelberg, Germany. Proceedings,, pp. 343-352.

Uhrmacher, Adelinde M. (1991) EMSY-An Extended Modelling System. In: IMACS 13th World Congress on Computation and Applied Mathematics, July 22-26, Trinity College Dublin, Ireland.

Uhrmacher, Adelinde M. (1991) EMSY-Zur Objektorientierten Modellierung ökologischer Systeme. In: 5.Workshop Simulation und Künstliche Intelligenz, Mai 07-08, FhG IML, Dortmund, Germany.

Uhrmacher, Adelinde M. and Lorenz, Gudrun (1989) Anwendung von KI-Techniken zur Modellierung und Bewertung eines ökologischen Systems. In: 4. Symposium Informatik im Umweltschutz, November 06-08, Karlsruhe, Germany. Proceedings,, pp. 368-376.

Lorenz, Gudrun and Uhrmacher, Adelinde M. and Simon, Karl-Heinz and Bossel, Hartmut (1989) Application of Artificial Intelligence Methods to the Representation and Modelling of Tree Growth. In: IUFRO Conference : Artificial Intelligence and Growth Models for Forest Management Decisions, September 18-22, Vienna, Austria. Proceedings,, pp. 234-243.