Reproducible and flexible simulation experiments with ML-Rules and SESSL

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2018) Reproducible and flexible simulation experiments with ML-Rules and SESSL. Bioinformatics, 34 (8), pp. 1424-1427. ISSN 1367-4803.

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The modeling language ML-Rules allows specifying and simulating complex systems biology models at multiple levels of organization. The development of such simulation models involves a wide variety of simulation experiments and the replicability of generated simulation results requires suitable means for documenting simulation experiments. Embedded domain-specific languages, such as SESSL, cater to both requirements. With SESSL, the user can integrate diverse simulation experimentation methods and third-party software components into an executable, readable simulation experiment specification. A newly developed SESSL binding for ML-Rules exploits these features of SESSL, opening up new possibilities for executing and documenting simulation experiments with ML-Rules models.

Item Type: Article
Projects: ESCeMMo