Introducing variable ports and multi-couplings for cell biological modeling in DEVS

Uhrmacher, Adelinde M. and Himmelspach, Jan and Röhl, Mathias and Ewald, Roland (2006) Introducing variable ports and multi-couplings for cell biological modeling in DEVS. In: Winter Simulation Conference, WSC 2006, December 3-6, Monterey, California, USA. Proceedings,, pp. 832-840.

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Official URL: http://dx.doi.org/10.1109/WSC.2006.323165

Abstract

Motivated by the requirements of molecular biological applications, we are suggesting an extension of the DEVS formalism. Starting with DYNDEVS a reflective variant of DEVS which supports dynamic behavior, composition, and interaction pattern, we develop rho-DEVS. Dynamic ports and multi-couplings are introduced whose combination allows models to reflect significant state changes to the outside world and enabling or disabling certain interactions at the same time. An abstract simulator describes the operational semantics of the developed formalism, and the Tryptophan operon model illustrates the developed ideas and concepts

Item Type: Conference or Workshop Item (Paper)
Projects: GRK dIEM oSiRiS