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Kreikemeyer, Justin N. and Andelfinger, Philipp and Uhrmacher, Adelinde M. (2024) Towards Learning Stochastic Population Models by Gradient Descent. In: 38th ACM SIGSIM Principles of Advanced Discrete Simulation (PADS 2024), 24-26 Jun 2024, Atlanta, Georgia, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY USA, pp. 88-92.
Uhrmacher, Adelinde M. and Frazier, Peter and Hähnle, Reiner and Klügl, Franziska and Lorig, Fabian and Ludäscher, Bertram and Nenzi, Laura and Ruiz-Martin, Cristina and Rumpe, Bernhard and Szabo, Claudia and Wainer, Gabriel A. and Wilsdorf, Pia (2024) Context, Composition, Automation, and Communication -- The C2AC Roadmap for Modeling and Simulation. ACM Transactions on Modeling and Computer Simulation (TOMACS), 34 (4), pp. 1-51. ISSN 1049-3301.
Wilsdorf, Pia and Zschaler, Steffen and Haack, Fiete and Uhrmacher, Adelinde M. (2024) Potential and challenges of assurance cases for simulation validation. In: 2024 Winter Simulation Conference (WSC 2024), 15-18 Dec 2024, Orlando, Florida, USA.
Zuska, Marian (2024) Automatische Priorisierung von Simulationsexperimenten. Masters thesis, Institute for Visual and Analytic Computing, University of Rostock.
Wilsdorf, Pia and Wolpers, Anja and Hilton, Jason D. and Haack, Fiete and Uhrmacher, Adelinde M. (2023) Automatic Reuse, Adaption, and Execution of Simulation Experiments via Provenance Patterns. ACM Transactions on Modeling and Computer Simulation (TOMACS), 33 (1-2), 4:1-4:27. ISSN 1049-3301 (print) 1558-1195 (online).
Kirchhübel, Anton Willy (2023) Jupyter Notebook Extension für die Generierung von Simulationsexperimenten. Bachelor thesis, Institute for Visual and Analytic Computing, University of Rostock.
Wilsdorf, Pia and Kirchhübel, Anton Willy and Uhrmacher, Adelinde M. (2023) nbSimGen: Jupyter Notebook Extension for Generating Simulation Experiments. In: Winter Simulation Conference (WSC 2023), 10-13 Dec 2023, San Antonio, Texas, USA.
Ruscheinski, Andreas and Wilsdorf, Pia and Zimmermann, Julius and van Rienen, Ursula and Uhrmacher, Adelinde M. (2022) An Artifact-based Workflow for Finite-Element Simulation Studies. Simulation Modelling Practice and Theory, 116, p. 102464. ISSN 1569-190X.
Wilsdorf, Pia and Heller, Jakob and Budde, Kai and Zimmermann, Julius and Warnke, Tom and Haubelt, Christian and Timmermann, Dirk and van Rienen, Ursula and Uhrmacher, Adelinde M. (2022) A Model-Driven Approach for Conducting Simulation Experiments. Applied Sciences, 12 (16), ISSN 2076-3417.
Wilsdorf, Pia and Uhrmacher, Adelinde M. (2022) Creating PROV-DM Graphs From Model Databases. In: Winter Simulation Conference (WSC 2022), 11-14 Dec 2022, Singapore. Proceedings, published by IEEE, pp. 2118-2129.
Budde, Kai and Smith, Jacob and Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2021) Relating simulation studies by provenance—Developing a family of Wnt signaling models. PLoS Computational Biology, 17 (8), pp. 1-21. ISSN 1553-7358 (print) 1553-734X (online).
Wilsdorf, Pia and Fischer, Nadine and Uhrmacher, Adelinde M. (2021) Exploiting Provenance and Ontologies in Supporting Best Practices for Simulation Experiments: A Case Study on Sensitivity Analysis. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.
Dombrowsky, Marcus (2020) Generating Various Types of Simulation Experiments based on Knowledge about (Previous) Simulation Studies. Masters thesis, Institute for Visual and Analytic Computing, University of Rostock.
Heller, Jakob and Wilsdorf, Pia and Niemann, Christoph and Plocksties, Franz and Uhrmacher, Adelinde M. and Haubelt, Christian and Timmermann, Dirk (2020) Assisting Early Design Decision For Implantable Neurostimulators Through Virtual Prototyping. In: Conference on Progress in Electrically Active Implants - Tissue and Functional Regeneration (ELAINE 2020), 29-30 Sep 2020, Rostock, Germany. Proceedings,, p. 42. Poster.
Ruscheinski, Andreas and Wolpers, Anja and Henning, Philipp and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2020) Pragmatic Logic-based Spatio-temporal Pattern Checking in Particle-based Models. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2245-2256.
Schröder, Kevin (2020) Codegenerierung für Workflowkomponenten. Bachelor thesis, Institute for Visual and Analytic Computing, University of Rostock.
Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2020) Conceptual Models in Simulation Studies: Making it Explicit. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2353-2360.
Ruscheinski, Andreas and Wilsdorf, Pia and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2019) Capturing and Reporting Provenance Information of Simulation Studies Based on an Artifact-Based Workflow Approach. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, USA, pp. 185-196.
Budde, Kai and Wilsdorf, Pia and Smith, Jacob and Haack, Fiete and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Reusing provenance information captured in WebProv for automatic generation of experiment specifications. In: INCOME 2019 (Integrative pathway modeling in systems biology and systems medicine), 25-29 Nov 2019, Berlin, Germany.
Pascheka, Daniel (2019) Wissensbasis für Domänenwissen der Modellierung und Simulation. Masters thesis, Institute of Computer Science, University of Rostock.
Ruscheinski, Andreas and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Artifact-based Workflows for Supporting Simulation Studies. IEEE Transactions on Knowledge and Data Engineering, 32 (6), pp. 1064-1078. ISSN 1041-4347 (print) 1558-2191 (electronic).
Schröder, Max and Raben, Hendrikje and Krüger, Frank and Ruscheinski, Andreas and van Rienen, Ursula and Uhrmacher, Adelinde M. and Spors, Sascha (2019) PROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-Electric Systems. In: 41st Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 23-27 Jul 2019, Berlin, Germany. Proceedings, published by IEEE, pp. 3377-3382.
Wilsdorf, Pia (2019) Towards Automatically Generating Simulation Experiments. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Poster.
Wilsdorf, Pia and Haack, Fiete and Budde, Kai and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Conducting Systematic, Partly Automated Simulation Studies – Unde Venis et Quo Vadis. In: 17th International Conference of Numerical Analysis and Applied Mathematics, 23-28 Sep 2019, Rhodes, Greece. Proceedings, published by AIP Publishing LCC, AIP Conference Proceedings 2293(1), 020001.
Wilsdorf, Pia and Zimmermann, Julius and Dombrowsky, Marcus and van Rienen, Ursula and Uhrmacher, Adelinde M. (2019) Simulation Experiment Schemas - Beyond Tools and Simulation Approaches. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Proceedings, published by IEEE, pp. 2783-2794.
Dombrowsky, Marcus (2018) Capturing and Managing Provenance Information from Simulation Studies. Bachelor thesis, Institute of Computer Science, University of Rostock.
Budde, Kai and Krummrich, Elisa and Ruscheinski, Andreas and Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2018) The Story Behind Wnt Simulation Models: Interrelating Wnt Models by Provenance Information. In: European Wnt Meeting 2018, 12-14 Sep 2018, Heidelberg. Poster.
Reinhardt, Oliver and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2018) ODD+P: Complementing the ODD Protocol With Provenance Information. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 727-738.
Ruscheinski, Andreas and Budde, Kai and Warnke, Tom and Wilsdorf, Pia and Hiller, Bjarne Christian and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2018) Generating Simulation Experiments Based on Model Documentations and Templates. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 715-726.
Ruscheinski, Andreas and Gjorgevikj, Dragana and Dombrowsky, Marcus and Budde, Kai and Uhrmacher, Adelinde M. (2018) Towards a PROV Ontology for Simulation Models. In: Provenance and Annotation of Data and Processes, 09-10 Jul 2018, London, UK. Proceedings, published by Springer International Publishing, pp. 192-195.
Taylor, Simon J. E. and Eldabi, Tillal and Monks, Tom and Rabe, Markus and Uhrmacher, Adelinde M. (2018) Crisis, What Crisis: Does Reproducibility in Modeling & Simulation Really Matter? In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 749-762.
Warnke, Tom and Uhrmacher, Adelinde M. (2018) Complex simulation experiments made easy. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 410-424.
Wilsdorf, Pia and Ruscheinski, Andreas and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2018) Managing Provenance of Simulation Studies. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Poster.
Wilsdorf, Pia and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2018) Synergies of Simulation Model Documentation and Simulation Experiment Generation. In: 16th International Conference on Computational Methods in Systems Biology (CMSB 2018), 12-14 Sep 2018, Brno, Czech Republic. Poster.
Bock, Conrad and Dandashi, Fatma and Friedenthal, Sanford and Harrison, Nathalie and Jenkins, Steven and McGinnis, Leon and Sztipanovits, Janos and Uhrmacher, Adelinde M. and Zhang, Lin (2017) Conceptual Modeling. In: Research Challenges in Modeling and Simulation for Engineering Complex Systems. Simulation Foundations, Methods and Applications . Springer, Cham, pp. 23-44. ISBN 978-3-319-58543-7 (Print), 978-3-319-58544-4 (Online).
Peng, Danhua and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2017) Reusing simulation experiment specifications in developing models by successive composition — a case study of the Wnt/β-catenin signaling pathway. Simulation: Transactions of the Society for Modeling and Simulation International, 93 (8), pp. 659-677. ISSN 0037-5497 (online 1741-3133).
Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2017) Provenance in Modeling and Simulation Studies - Bridging Gaps. In: Winter Simulation Conference (WSC 2017), 3-6 Dec 2017, Las Vegas, NV, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 872-883.
Peng, Danhua and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2016) Reusing simulation experiment specifications to support developing models by successive extension. Simulation Modelling Practice and Theory, 68, pp. 33-53. ISSN 1569-190X.
Ruscheinski, Andreas (2016) Artefaktbasierte Workflows zur semi-automatischen Validierung von Modellerweiterungen. Masters thesis, Institute of Computer Science, University of Rostock.
