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Gley, Kevin and Murani, Eduard and Haack, Fiete and Trakooljul, Nares and Zebunke, Manuela and Puppe, Birger and Wimmers, Klaus and Ponsuksili, Siriluck (2019) Haplotypes of coping behavior associated QTL regions reveal distinct transcript profiles in amygdala and hippocampus. Behavioural Brain Research, 372, p. 112038. ISSN 0166-4328.
Haack, Fiete and Trakooljul, Nares and Gley, Kevin and Murani, Eduard and Hadlich, Frieder and Wimmers, Klaus and Ponsuksili, Siriluck (2019) Deep sequencing of small non-coding RNA highlights brain-specific expression patterns and RNA cleavage. RNA Biology, 16 (12), pp. 1764-1774. ISSN 1547-6286.
Köster, Till and Henning, Philipp and Uhrmacher, Adelinde M. (2019) Potential based, spatial simulation of dynamically nested particles. BMC Bioinformatics, 20 (607), ISSN 1471-2105.
Ruscheinski, Andreas and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Artifact-based Workflows for Supporting Simulation Studies. IEEE Transactions on Knowledge and Data Engineering, 32 (6), pp. 1064-1078. ISSN 1041-4347 (print) 1558-2191 (electronic).
Xiao, Jiajian and Andelfinger, Philipp and Eckhoff, David and Cai, Wentong and Knoll, Alois (2019) A Survey on Agent-based Simulation Using Hardware Accelerators. ACM Computing Surveys, 51 (6), pp. 1-35. ISSN 0360-0300.
Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules. In: Modeling Biomolecular Site Dynamics. Methods in Molecular Biology, 1945 . Humana Press, New York, NY, pp. 141-160. ISBN 978-1-4939-9100-6 (print) 978-1-439-9102-0 (Online).
Reinhardt, Oliver and Warnke, Tom and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Valid and Reproducible Simulation Studies—Making It Explicit. In: Computer Simulation Validation. Fundamental Concepts, Methodological Frameworks, Philosophical Perspectives. Springer International Publishing, Cham, pp. 607-672. ISBN 978-3-319-70765-5.
Andelfinger, Philipp and Ivanchev, Jordan and Eckhoff, David and Cai, Wentong and Knoll, Alois (2019) From Effects to Causes: Reversible Simulation and Reverse Exploration of Microscopic Traffic Models. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, NY, USA, pp. 173-184.
Budde, Kai and Smith, Jacob and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) WebProv: A web-based tool to access, store, and display provenance information of simulation models. In: 10th "Computational Modeling in Biology Network" (COMBINE) Meeting, 15-19 Jul 2019, Heidelberg, Germany. Poster.
Budde, Kai and Wilsdorf, Pia and Smith, Jacob and Haack, Fiete and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Reusing provenance information captured in WebProv for automatic generation of experiment specifications. In: INCOME 2019 (Integrative pathway modeling in systems biology and systems medicine), 25-29 Nov 2019, Berlin, Germany.
Budde, Kai and Zimmermann, Julius and Neuhaus, Elisa and Schröder, Max and Uhrmacher, Adelinde M. and van Rienen, Ursula (2019) Requirements for Documenting Electrical Cell Stimulation Experiments for Replicability and Numerical Modeling. In: 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 23-27 July 2019, Berlin, Germany. Proceedings, published by IEEE, pp. 1082-1088.
Haase, Kevin and Reinhardt, Oliver and Uhrmacher, Adelinde M. and Weltersbach, Marc Simon and Lewin, Wolf-Christian and Strehlow, Harry V. (2019) Towards An Agent-based Model for Managing Recreational Fisheries of Western Baltic Cod. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Poster.
Köster, Till (2019) Efficient Simulation of Cell-Biological Multi-Level Models. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Poster.
Nguyen, Quang Anh Pham and Andelfinger, Philipp and Cai, Wentong and Knoll, Alois (2019) Transitioning Spiking Neural Network Simulators to Heterogeneous Hardware. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, NY, USA, pp. 115-126.
Reinhardt, Oliver and Hinsch, Martin and Bijak, Jakub and Uhrmacher, Adelinde M. (2019) Developing Agent-Based Migration Models In Pairs. In: MPIDR Rostock Retreat on Simulation, 01-03 July 2019, Rostock, Germany. Poster.
Reinhardt, Oliver and Hinsch, Martin and Bijak, Jakub and Uhrmacher, Adelinde M. (2019) Developing Agent-Based Migration Models in Pairs. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Proceedings, published by IEEE, pp. 2713-2724.
Ruscheinski, Andreas and Wilsdorf, Pia and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2019) Capturing and Reporting Provenance Information of Simulation Studies Based on an Artifact-Based Workflow Approach. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, USA, pp. 185-196.
Schröder, Max and Raben, Hendrikje and Krüger, Frank and Ruscheinski, Andreas and van Rienen, Ursula and Uhrmacher, Adelinde M. and Spors, Sascha (2019) PROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-Electric Systems. In: 41st Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 23-27 Jul 2019, Berlin, Germany. Proceedings, published by IEEE, pp. 3377-3382.
Su, Boyi and Andelfinger, Philipp and Eckhoff, David and Cornet, Henriette and Marinkovic, Goran and Cai, Wentong and Knoll, Alois (2019) An Agent-Based Model for Evaluating the Boarding and Alighting Efficiency of Autonomous Public Transport Vehicles. In: International Conference on Computational Science (ICCS 2019), 12-14 Jun 2019, Faro, Portugal. Proceedings, published by Springer, Cham, pp. 534-547.
Warnke, Tom and Uhrmacher, Adelinde M. (2019) Reproducible parallel simulation experiments via pure functional programming. In: 2019 IEEE/ACM 23rd International Symposium on Distributed Simulation and Real Time Applications (DS-RT), 07-09 Oct 2019, Cosenza, Italy. Proceedings, published by IEEE Computer Society, Los Alamitos, CA, USA, pp. 1-8.
Wilsdorf, Pia (2019) Towards Automatically Generating Simulation Experiments. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Poster.
Wilsdorf, Pia and Haack, Fiete and Budde, Kai and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Conducting Systematic, Partly Automated Simulation Studies – Unde Venis et Quo Vadis. In: 17th International Conference of Numerical Analysis and Applied Mathematics, 23-28 Sep 2019, Rhodes, Greece. Proceedings, published by AIP Publishing LCC, AIP Conference Proceedings 2293(1), 020001.
Wilsdorf, Pia and Pierce, Maria E. and Hillston, Jane and Uhrmacher, Adelinde M. (2019) Round-based Super-Individuals - Balancing Speed and Accuracy. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2019), 03-05 Jun 2019, Chicago, IL, USA. Proceedings, published by ACM, New York, USA, pp. 95-98.
Wilsdorf, Pia and Zimmermann, Julius and Dombrowsky, Marcus and van Rienen, Ursula and Uhrmacher, Adelinde M. (2019) Simulation Experiment Schemas - Beyond Tools and Simulation Approaches. In: Winter Simulation Conference (WSC 2019), 08-11 Dec 2019, National Harbor, Maryland, USA. Proceedings, published by IEEE, pp. 2783-2794.
Xiao, Jiajian and Andelfinger, Philipp and Cai, Wentong and Richmond, Paul and Knoll, Alois and Eckhoff, David (2019) Advancing Automatic Code Generation for Agent-Based Simulations on Heterogeneous Hardware. In: The International Workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms (HeteroPar'2019), 27 Aug 2019, Göttingen, Germany. Proceedings, published by Springer, Cham, pp. 308-319.
Göbel, Lisa (2019) Modellierung und Simulation der Ausbreitung von Gerüchten in sozialen Netzwerken mit ML3. Other thesis, Fakultät für Informatik und Elektrotechnik, Universität Rostock.
Hauptmann, Felix (2019) Parallelisierung der Next Reaction Method für zell-biologische Simulation. Bachelor thesis, Institute of Computer Science, University of Rostock.
Pascheka, Daniel (2019) Wissensbasis für Domänenwissen der Modellierung und Simulation. Masters thesis, Institute of Computer Science, University of Rostock.
