Items where Project is "ESCeMMo"

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Number of items: 31.

Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2018) Multi-level Modeling and Simulating of Cell Biological Systems - ML-Rules At Work. In: Modeling Biomolecular Site Dynamics: Methods and Protocols. Methods in Molecular Biology . Springer (to appear).

Köster, Till and Uhrmacher, Adelinde M. (2018) Handling Dynamic Sets of Reactions in Stochastic Simulation Algorithms. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2018), 23-25 May 2018, Rome, Italy. Proceedings, published by ACM, New York, NY, USA, pp. 161-164.

Meyer, Tom and Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2018) On Performance Benefits of Code Generation at Runtime for Interpreted Domain-Specific Modeling Languages. In: Winter Simulation Conference (WSC 2018), 9-12 Dec 2018, Göteborg, Sweden. (In Press)

Köster, Till and Uhrmacher, Adelinde M. (2017) Multi-Level Particle-Based Modeling and Simulation of Cell Biological Systems. In: V International Conference on Particle-Based Methods, 26-28 Sep 2017, Hannover, Germany. Invited Talk.

Helms, Tobias and Warnke, Tom and Maus, Carsten and Uhrmacher, Adelinde M. (2017) Semantics and Efficient Simulation Algorithms of an Expressive Multi-Level Modeling Language. ACM Transactions on Modeling and Computer Simulation (TOMACS), 27 (2), 8:1-8:25. ISSN 1049-3301 (print) 1558-1195 (online).

Henning, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2017) Idiosyncracies in Multi-Spatial Modeling. In: 15th Conference on Computational Methods in Systems Biology (CMSB 2017), 27-29 Sep 2017, Darmstadt, Germany. Poster.

Köster, Till and Perumalla, Kalyan and Uhrmacher, Adelinde M. (2017) Efficient Simulation of Nested Hollow Sphere Intersections for Dynamically Nested Compartmental Models in Cell Biology. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2017), 24-26 May 2017, Singapore. Proceedings, published by ACM New York, NY, USA, pp. 173-183.

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2017) Reproducible and flexible simulation experiments with ML-Rules and SESSL. Bioinformatics, btx742. ISSN 1367-4803.

Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. In: 9th EAI International Conference on Performance Evaluation Methodologies and Tools, 14-16 Dec 2015, Berlin, Germany. Proceedings, published by ICST, Brussels, Belgium, pp. 149-152.

Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. EAI Endorsed Transactions on Collaborative Computing, 16 (10), e2. ISSN 2312-8623.

Kossow, Christina and Helms, Tobias and Kreutzer, Jan M. and Martens, Alke and Uhrmacher, Adelinde M. (2016) Evaluating Different Modeling Languages Based on a User Study. In: 49th Annual Simulation Symposium (ANNS 2016), 3-6 Apr 2016, Pasadena, CA, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, 18:1-18:8.

Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2015) Automatic Runtime Adaptation for Component-Based Simulation Algorithms. ACM Transactions on Modeling and Computer Simulation (TOMACS), 26 (1), 7:1-7:24. ISSN 1049-3301 (print) 1558-1195 (online).

Haack, Fiete and Lemcke, Heiko and Ewald, Roland and Rharass, Tareck and Uhrmacher, Adelinde M. (2015) Spatio-temporal Model of Endogenous ROS and Raft-Dependent WNT/Beta-Catenin Signaling Driving Cell Fate Commitment in Human Neural Progenitor Cells. PLoS Computational Biology, 11 (3), e104106. ISSN 1553-7358 (print) 1553-734X (online).

Gilbert, David and Heiner, Monika and Takahashi, Koichi and Uhrmacher, Adelinde M. (2015) Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481). Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Dagstuhl, Germany.

Helms, Tobias and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2015) Bayesian changepoint detection for generic adaptive simulation algorithms. In: 48th Annual Simulation Symposium (ANSS 2015) part of the Spring Simulation Multiconference (SpringSim 2015), 12-15 Apr, Alexandria, VA, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, pp. 62-69.

Kossow, Christina and Rybacki, Stefan and Millat, Thomas and Rateitschak, Katja and Jaster, Robert and Uhrmacher, Adelinde M. and Wolkenhauer, Olaf (2015) An explicit numerical scheme to efficiently simulate molecular diffusion in environments with dynamically changing barriers. Mathematical and Computer Modelling of Dynamical Systems, 21 (6), pp. 535-559. ISSN 1387-3954 (print) 1744-5051 (online).

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2015) Syntax and Semantics of a Multi-Level Modeling Language. In: 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2015), 10-12 Jun 2015, London, UK. Proceedings, published by ACM, New York, NY, USA, pp. 133-144.

Helms, Tobias and Maus, Carsten and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Multi-level modeling and simulation of cell biological systems with ML-rules: a tutorial. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 177-191.

Helms, Tobias and Uhrmacher, Adelinde M. (2014) Hybrid Execution of Dynamic Rule-based Multi-level Models. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.

Mentel, Steffen (2014) Konfiguration dynamischer Zustandsräume für adaptive Simulationsalgorithmen. Bachelor thesis, Institut für Informatik, Universität Rostock.

Nähring, Sebastian (2014) Functions on Solutions - Language Extension of ML-Rules. Masters thesis, Institute of Computerscience, University of Rostock.

Reinhardt, Oliver (2014) Bayessche Changepoint-Detection zur Unterstützung adaptiver Simulationsalgorithmen. Bachelor thesis, Institut für Informatik, Universität Rostock.

Warnke, Tom and Peng, Danhua and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Towards a Language for Specifying Properties of Simulation Trajectories. In: International Conference on Computational Methods in Systems Biology (CMSB 2014), 17-19 Nov 2014, Manchester, UK. Poster.

Zabel, Jakob (2014) Statistisches Testen von komponenten-basierten stochastischen Simulationsalgorithmen. Masters thesis, Institut für Informatik, Universität Rostock.

Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2013) A generic adaptive simulation algorithm for component-based simulation systems. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2013), 19-22 May 2013, Montreal, QC, Canada. Proceedings, published by ACM, NewYork, USA, pp. 11-22.

Helms, Tobias and Luboschik, Martin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2013) An Approximate Execution of Rule-Based Multi-level Models. In: 11th International Conference on Computational Methods in Systems Biology (CMSB 2013), 22-24 Sep 2013, Klosterneuburg, Austria. Proceedings, published by Springer, Berlin, Heidelberg, Lecture Notes in Computer Science (LNCS), volume 8130, pp. 19-32.

Holle, Marcel (2013) Dynamische Zustandsraumrepräsentation für Adaptive Simulationsalgorithmen. Bachelor thesis, Institut für Informatik, Universität Rostock.

Nähring, Sebastian and Ewald, Roland and Uhrmacher, Adelinde M. and Maus, Carsten (2013) From standardized modeling formats to modeling languages and back - An exploration based on SBML and ML-Rules. In: Winter Simulations Conference (WSC 2013), 08-11 Dec 2013, Washington, D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 1359-1370.

Helms, Tobias (2012) Adaptive Laufzeit-Rekonfiguration von ML-Rules Simulationen. Masters thesis, Institut für Informatik, Universität Rostock.

Helms, Tobias and Himmelspach, Jan and Maus, Carsten and Oliver, Röwer and Schützel, Johannes and Uhrmacher, Adelinde M. (2012) Toward a language for the flexible observation of simulations. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 418:1-418:12.

Helms, Tobias and Rybacki, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2012) An adaptive simulator for ML-rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 390:1-390:2. Poster.

This list was generated on Mon Jun 18 18:45:05 2018 CEST.