Items where Project is "ESCeMMo"

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Number of items: 27.

Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2018) Multi-level Modeling and Simulating of Cell Biological Systems - ML-Rules At Work. In: Modeling Biomolecular Site Dynamics: Methods and Protocols. Methods in Molecular Biology . Springer (to appear).

Helms, Tobias and Warnke, Tom and Maus, Carsten and Uhrmacher, Adelinde M. (2017) Semantics and Efficient Simulation Algorithms of an Expressive Multi-Level Modeling Language. ACM Transactions on Modeling and Computer Simulation (TOMACS), 27 (2). 8-1-8-25. ISSN 1049-3301 (print) 1558-1195 (online)

Henning, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2017) IDIOSYNCRACIES IN MULTI-SPATIAL MODELING. In: 15th Conference on Computational Methods in Systems Biology (CMSB'2017), 27-29 Sep 2017, Darmstadt, Germany.

Köster, Till and Perumalla, Kalyan and Uhrmacher, Adelinde M. (2017) Efficient Simulation of Nested Hollow Sphere Intersections for Dynamically Nested Compartmental Models in Cell Biology. In: SIGSIM Principles of Advanced Discrete Simulation, SIGSIM-PADS '17, May 24-26, Singaapore, Repiblic of Singapore.

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2017) Reproducible and flexible simulation experiments with ML-Rules and SESSL. Bioinformatics. ISSN 1367-4803

Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. In: 9th EAI International Conference on Performance Evaluation Methodologies and Tools, 14th-16th Dec 2015, Berlin, Germany.

Kossow, Christina and Helms, Tobias and Kreutzer, Jan M. and Martens, Alke and Uhrmacher, Adelinde M. (2016) Evaluating Different Modeling Languages Based on a User Study. In: Proceedings of the SpringSim'16 Spring Simulation Multi-Conference, 3.-6. April, 2016, Pasadena, CA, USA.

Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2015) Automatic Runtime Adaptation for Component-Based Simulation Algorithms. ACM Trans. Model. Comput. Simul., 26 (1). 7:1-7:24.

Haack, Fiete and Lemcke, Heiko and Ewald, Roland and Rharass, Tareck and Uhrmacher, Adelinde M. (2015) Spatio-temporal Model of Endogenous ROS and Raft-Dependent WNT/Beta-Catenin Signaling Driving Cell Fate Commitment in Human Neural Progenitor Cells. PLoS Computational Biology, 11 (3).

Gilbert, David and Heiner, Monika and Takahashi, Koichi and Uhrmacher, Adelinde M. (2015) Multiscale Spatial Computational Systems Biology (Dagstuhl Seminar 14481). Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik, Dagstuhl, Germany.

Helms, Tobias and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2015) Bayesian changepoint detection for generic adaptive simulation algorithms. In: Proceedings of the 48th Annual Simulation Symposium, ANSS 2015, part of the 2015 Spring Simulation Multiconference, SpringSim '15, Alexandria, VA, USA, April 12-15, 2015.

Kossow, Christina and Rybacki, Stefan and Millat, Thomas and Rateitschak, Katja and Jaster, Robert and Uhrmacher, Adelinde M. and Wolkenhauer, Olaf (2015) An explicit numerical scheme to efficiently simulate molecular diffusion in environments with dynamically changing barriers. Mathematical and Computer Modelling of Dynamical Systems, 21 (6). pp. 535-559.

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2015) Syntax and Semantics of a Multi-Level Modeling Language. In: Proceedings of the 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation.

Helms, Tobias and Maus, Carsten and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Multi-level modeling and simulation of cell biological systems with ML-rules: a tutorial. In: Proceedings of the 2014 Winter Simulation Conference, Savannah, GA, USA, December 7-10, 2014.

Helms, Tobias and Uhrmacher, Adelinde M. (2014) Hybrid Execution of Dynamic Rule-based Multi-level Models. In: WSC'14 Winter Simulation Conference, December 07-10, Savannah, GA, USA.

Mentel, Steffen (2014) Konfiguration dynamischer Zustandsräume für adaptive Simulationsalgorithmen. Bachelor thesis, Universität Rostock.

Nähring, Sebastian (2014) Functions on Solutions - Language Extension of ML-Rules. Masters thesis, University of Rostock.

Reinhardt, Oliver (2014) Bayessche Changepoint-Detection zur Unterstützung adaptiver Simulationsalgorithmen. Bachelor thesis, Universität Rostock.

Warnke, Tom and Peng, Danhua and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Towards a Language for Specifying Properties of Simulation Trajectories. In: CMSB 2014: 12th International Conference on Computational Methods in Systems Biology, November 17-19, Manchester, UK.

Zabel, Jakob (2014) Statistisches Testen von komponenten-basierten stochastischen Simulationsalgorithmen. Masters thesis, Universität Rostock.

Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2013) A generic adaptive simulation algorithm for component-based simulation systems. In: SIGSIM Principles of Advanced Discrete Simulation, SIGSIM-PADS '13, May 19-22, Montreal, QC, Canada.

Helms, Tobias and Luboschik, Martin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2013) An Approximate Execution of Rule-Based Multi-level Models. In: Computational Methods in Systems Biology - 11th International Conference, CMSB 2013. Proceedings, September 22-24, Klosterneuburg, Austria.

Holle, Marcel (2013) Dynamische Zustandsraumrepräsentation für Adaptive Simulationsalgorithmen. Bachelor thesis, Universität Rostock.

Nähring, Sebastian and Ewald, Roland and Uhrmacher, Adelinde M. and Maus, Carsten (2013) From standardized modeling formats to modeling languages and back - An exploration based on SBML and ML-Rules. In: Winter Simulations Conference: Simulation Making Decisions in a Complex World, WSC 2013, December 8-11, Washington, DC, USA.

Helms, Tobias (2012) Adaptive Laufzeit-Rekonfiguration von ML-Rules Simulationen. Masters thesis, Universität Rostock.

Helms, Tobias and Himmelspach, Jan and Maus, Carsten and Oliver, Röwer and Schützel, Johannes and Uhrmacher, Adelinde M. (2012) Toward a language for the flexible observation of simulations. In: Winter Simulation Conference, WSC '12, December 9-12, Berlin, Germany.

Helms, Tobias and Rybacki, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2012) An adaptive simulator for ML-rules. In: Winter Simulation Conference, WSC '12, Berlin, Germany, December 9-12, 2012.

This list was generated on Sun Feb 18 09:18:38 2018 CET.