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Mazemondet, Orianne and John, Mathias and Leye, Stefan and Rolfs, Arndt and Uhrmacher, Adelinde M. (2012) Elucidating the Sources of β-Catenin Dynamics in Human Neural Progenitor Cells. PLoS ONE, 7 (8), e42792. ISSN 1932-6203.
Maus, Carsten and Rybacki, Stefan and Uhrmacher, Adelinde M. (2011) Rule-based multi-level modeling of cell biological systems. BMC Systems Biology, 5 (166), ISSN 1752-0509 (electronic version).
Mazemondet, Orianne and Hübner, Rayk and Frahm, Jana and Koczan, Dirk and Bader, Benjamin and Weiss, Dieter and Uhrmacher, Adelinde M. and Frech, Moritz and Rolfs, Arndt and Luo, Jiankai (2011) Quantitative and kinetic profile of Wnt/β-catenin signaling components during human neural progenitor cell differentiation. Cellular and Molecular Biology Letters, 16 (4), pp. 515-538. ISSN 1689-1392.
Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2011) Exploring the performance of spatial stochastic simulation algorithms. Journal of Computational Physics, 230 (7), pp. 2562-2574. ISSN 0021-9991.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics, 11 (3), pp. 290-300. ISSN 1467-5463.
John, Mathias and Lhoussaine, Cédric and Niehren, Joachim and Uhrmacher, Adelinde M. (2010) The Attributed Pi-Calculus with Priorities. Transactions on Computational Systems Biology 12, pp. 13-76.
Maus, Carsten and John, Mathias and Rybacki, Stefan and Uhrmacher, Adelinde M. (2010) Towards Rule-Based Multi-Level Modeling. In: 11th International Conference on Systems Biology (ICSB 2010), 10-15 Oct 2010, Edinburgh, UK. Poster.
Henkel, Ron and Köhn, Dagmar and Peters, Andre and Maus, Carsten (2009) Similarity Measures for Computational Biological Models. In: 6th International Workshop Data Integration in the Life Sciences (DILS 2009), 20-22 Jul, Manchester, UK. Poster.
Köhn, Dagmar and Maus, Carsten and Henkel, Ron and Kolbe, Martin (2009) Towards Enhanced Retrieval of Biological Models through Annotation-Based Ranking. In: 6th International Workshop on Data Integration in Life Science (DILS 2009), July 20-22, Manchester, UK. Proceedings,, pp. 204-219.
Maus, Carsten and Jeschke, Matthias and Uhrmacher, Adelinde M. (2009) Spatial Multi-Level Modelling and Simulation for Systems Biology. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.
Mazemondet, Orianne and John, Mathias and Maus, Carsten and Uhrmacher, Adelinde M. and Rolfs, Arndt (2009) Integrating Diverse Reaction Types into Stochastic Models - A Signaling Pathway Case Study in the Imperative π-Calculus. In: Winter Simulation Conference, WSC 2009, December 13-16, Austin, TX, USA. Proceedings,, pp. 932-943.
Mazemondet, Orianne and John, Mathias and Maus, Carsten and Uhrmacher, Adelinde M. and Rolfs, Arndt (2009) Modeling the Cell Cycle Dependency of the Wnt/β-catenin Signaling Pathway in the Imperative π-Calculus. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.
Köhn, Dagmar and Heuer, Andreas and Maus, Carsten (2008) Eine Datenbanklösung für Modellwiederverwendung in der Systembiologie. In: 20. GI-Workshop Grundlagen von Datenbanken, May 13-16, Apolda, Thüringen, Germany. Proceedings,, pp. 61-65.
Maus, Carsten (2008) Component-Based Modelling of RNA Structure Folding. In: CMSB 2008: International Conference on Computational Methods in Systems Biology, October 12-15, Rostock, Germany. Proceedings,, pp. 44-62.
Maus, Carsten and John, Mathias and Röhl, Mathias and Uhrmacher, Adelinde M. (2008) Hierarchical Modeling for Computational Biology. In: Formal Methods for Computational Systems Biology, 8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems, Advanced Lectures, June 2-7, Bertinoro, Italy. Proceedings,, pp. 81-124.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Jeschke, Matthias and John, Mathias and Leye, Stefan and Maus, Carsten and Röhl, Mathias and Ewald, Roland (2008) One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II. In: 1st International Workshop Formal Methods in Systems Biology, FMSB 2008, June 4-5, Cambridge, UK. Proceedings,, pp. 123-138.
Ewald, Roland and Gutzeit, Enrico and Schwanke, Sebastian and Uhrmacher, Adelinde M. and Lange, Christian and Biermann, Susanne and Maus, Carsten (2006) Multi-Level Modeling with DEVS - A Critical Inspection and Steps Towards a Feasible Approach. In: Winter Simulation Conference 2006 (WSC'2006), December 03-06, Monterey, CA, USA. Poster.
Maus, Carsten (2013) Toward Accessible Multilevel Modeling in Systems Biology. A Rule-based Language Concept. PhD thesis, Institute of Computer Science, University of Rostock.
