Items where Author is "Warnke, Tom"

Article

Köster, Till and Henning, Philipp and Warnke, Tom and Uhrmacher, Adelinde (2024) Expressive rule-based modeling and fast simulation for dynamic compartments. PLOS ONE, 19 (10), e0312813. ISSN 1932-6203.

Köster, Till and Warnke, Tom and Uhrmacher, Adelinde M. (2022) Generating Fast Specialized Simulators for Stochastic Reaction Networks via Partial Evaluation. ACM Transactions on Modeling and Computer Simulation (TOMACS), 32 (2), pp. 1-25. ISSN 1049-3301 (print) 1558-1195 (online).

Reinhardt, Oliver and Warnke, Tom and Uhrmacher, Adelinde M. (2022) A Language for Agent-Based Discrete-Event Modeling and Simulation of Linked Lives. ACM Transactions on Modeling and Computer Simulation (TOMACS), 32 (1), pp. 1-26. ISSN 1049-3301 (print) 1558-1195 (online).

Wilsdorf, Pia and Heller, Jakob and Budde, Kai and Zimmermann, Julius and Warnke, Tom and Haubelt, Christian and Timmermann, Dirk and van Rienen, Ursula and Uhrmacher, Adelinde M. (2022) A Model-Driven Approach for Conducting Simulation Experiments. Applied Sciences, 12 (16), ISSN 2076-3417.

Ruscheinski, Andreas and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Artifact-based Workflows for Supporting Simulation Studies. IEEE Transactions on Knowledge and Data Engineering, 32 (6), pp. 1064-1078. ISSN 1041-4347 (print) 1558-2191 (electronic).

Reinhardt, Oliver and Hilton, Jason D. and Warnke, Tom and Bijak, Jakub and Uhrmacher, Adelinde M. (2018) Streamlining simulation experiments with agent-based models in demography. Journal of Artificial Societies and Social Simulation, 21 (3),

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2018) Reproducible and flexible simulation experiments with ML-Rules and SESSL. Bioinformatics, 34 (8), pp. 1424-1427. ISSN 1367-4803.

Pierce, Maria E. and Warnke, Tom and Krumme, Uwe and Helms, Tobias and Hammer, Cornelius and Uhrmacher, Adelinde M. (2017) Developing and validating a multi-level ecological model of eastern Baltic cod (Gadus morhua) in the Bornholm Basin - a case for domain-specific languages. Ecological Modeling, 361, pp. 49-65. ISSN 0304-3800.

Helms, Tobias and Warnke, Tom and Maus, Carsten and Uhrmacher, Adelinde M. (2017) Semantics and Efficient Simulation Algorithms of an Expressive Multi-Level Modeling Language. ACM Transactions on Modeling and Computer Simulation (TOMACS), 27 (2), 8:1-8:25. ISSN 1049-3301 (print) 1558-1195 (online).

Peng, Danhua and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2017) Reusing simulation experiment specifications in developing models by successive composition — a case study of the Wnt/β-catenin signaling pathway. Simulation: Transactions of the Society for Modeling and Simulation International, 93 (8), pp. 659-677. ISSN 0037-5497 (online 1741-3133).

Warnke, Tom and Reinhardt, Oliver and Klabunde, Anna and Willekens, Frans and Uhrmacher, Adelinde M. (2017) Modelling and Simulating Decision Processes of Linked Lives - An Approach Based on Concurrent Processes and Stochastic Race. Population Studies, 71 (sup1), pp. 69-83. ISSN 0032-4728 (print) 1477-4747 (online).

Peng, Danhua and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2016) Reusing simulation experiment specifications to support developing models by successive extension. Simulation Modelling Practice and Theory, 68, pp. 33-53. ISSN 1569-190X.

Peng, Danhua and Warnke, Tom and Uhrmacher, Adelinde M. (2015) Domain-Specific Languages for Flexbily Experimenting with Stochastic Models. SNE Simulation Notes Europe, 25 (2), pp. 117-122. ISSN 2305-9974.

Book Section

Reinhardt, Oliver and Warnke, Tom and Uhrmacher, Adelinde M. (2022) Agent-Based Modelling and Simulation with Domain-Specific Languages. In: Towards Bayesian Model-Based Demography. METH (17). Springer International Publishing, Cham, pp. 113-134. ISBN 978-3-030-83039-7.

Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules. In: Modeling Biomolecular Site Dynamics. Methods in Molecular Biology, 1945 . Humana Press, New York, NY, pp. 141-160. ISBN 978-1-4939-9100-6 (print) 978-1-439-9102-0 (Online).

Reinhardt, Oliver and Warnke, Tom and Ruscheinski, Andreas and Uhrmacher, Adelinde M. (2019) Valid and Reproducible Simulation Studies—Making It Explicit. In: Computer Simulation Validation. Fundamental Concepts, Methodological Frameworks, Philosophical Perspectives. Springer International Publishing, Cham, pp. 607-672. ISBN 978-3-319-70765-5.

Conference or Workshop Item

Kreikemeyer, Justin N. and Köster, Till and Uhrmacher, Adelinde M. and Warnke, Tom (2021) Inferring Dependency Graphs for Agent-based Models Using Aspect-oriented Programming. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.

Warnke, Tom and Uhrmacher, Adelinde M. (2021) Nonlinear pattern matching in rule-based modeling languages. In: 19th International Conference on Computational Methods in Systems Biology (CMSB 2021), 22-24 Sep 2021, Bordeaux, France. Proceedings, published by Springer International Publishing, Cham, pp. 198-214.

Köster, Till and Warnke, Tom and Uhrmacher, Adelinde M. (2020) Partial evaluation via code generation for static stochastic reaction network models. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2020), 15-17 Jun 2020, Miami, Florida, USA. Proceedings, published by ACM, New York, USA, pp. 159-170.

Ruscheinski, Andreas and Wolpers, Anja and Henning, Philipp and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2020) Pragmatic Logic-based Spatio-temporal Pattern Checking in Particle-based Models. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2245-2256.

Warnke, Tom and Uhrmacher, Adelinde M. (2020) Simulation projects with Computer Science undergraduate students. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Poster.

Warnke, Tom and Uhrmacher, Adelinde M. (2019) Reproducible parallel simulation experiments via pure functional programming. In: 2019 IEEE/ACM 23rd International Symposium on Distributed Simulation and Real Time Applications (DS-RT), 07-09 Oct 2019, Cosenza, Italy. Proceedings, published by IEEE Computer Society, Los Alamitos, CA, USA, pp. 1-8.

Warnke, Tom and Uhrmacher, Adelinde M. (2018) Complex simulation experiments made easy. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 410-424.

Ruscheinski, Andreas and Budde, Kai and Warnke, Tom and Wilsdorf, Pia and Hiller, Bjarne Christian and Dombrowsky, Marcus and Uhrmacher, Adelinde M. (2018) Generating Simulation Experiments Based on Model Documentations and Templates. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 715-726.

Warnke, Tom and Krüger, Frank and Uhrmacher, Adelinde M. (2018) Open Simulation Software - Development and Application. In: ASIM 2018 - 24. Symposium Simulationstechnik, 4-5 Oct 2018, Hamburg, Germany. Proceedings, published by ARGESIM Verlag Wien, pp. 307-312.

Meyer, Tom and Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2018) Runtime Code Generation for Interpreted Domain-Specific Modeling Languages. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 605-616.

Budde, Kai and Warnke, Tom and Uhrmacher, Adelinde M. and Schätz, Eric and Starke, Jens and Haack, Fiete (2017) Exploiting equation-free analysis for multi-level, agent-based models in cell biology. In: Winter Simulation Conference (WSC 2017), 3-6 Dec 2017, Las Vegas, NV, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 4564-4565. Poster.

Warnke, Tom and Uhrmacher, Adelinde M. (2017) Practical expressiveness of internal and external domain­specific modeling languages. In: Winter Simulation Conference (WSC 2017), 3-6 Dec 2017, Las Vegas, NV, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 4566-4567. Poster.

Warnke, Tom and Roesicke, Lars and Schulz, Hans-Jörg and Uhrmacher, Adelinde M. (2017) Simulation Galleries - Combining Experiment Design and Visual Analytics. In: INFORMS Simulation Society 2017 Research Workshop (I-Sim 2017), 31 Jul - 02 Aug 2017, University of Durham, UK. Poster.

Warnke, Tom (2016) A DSL for continuous-time agent-based modeling and simulation. In: Winter Simulation Conference (WSC 2016), 11-14 Dec 2016, Washington D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 3678-3679. Poster.

Warnke, Tom and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2016) Population-based CTMCs and Agent-based Models. In: Winter Simulation Conference 2016, 11-14 Dec 2016, Washington D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1253-1264.

Warnke, Tom and Uhrmacher, Adelinde M. (2016) Spatiotemporal Pattern Matching in RoboCup. In: German Conference on Multiagent System Technologies (MATES) 2016, 27-30 Sep 2016, Klagenfurt, Austria. Proceedings, published by Springer, Cham, LNCS, volume 9872, pp. 89-104.

Warnke, Tom and Peng, Danhua and Uhrmacher, Adelinde M. (2015) Domain-Specific Languages for Flexibly Experimenting With Models. In: Workshop der ASIM/GI-Fachgruppen STS (Simulation Technischer Systeme) und GMMS (Grundlagen und Methoden in Modellbildung und Simulation), 18-19 Jun, Stralsund, Germany. Proceedings, published by ARGESIM Report, Band 50, pp. 285-286.

Pierce, Maria E. and Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. and Krumme, Uwe and Hammer, Cornelius (2015) Individual-based cod simulation with ML-Rules. In: Winter Simulation Conference (WSC 2015), 6-9 Dec 2015, Huntington Beach, CA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 3192-3193. Poster.

Warnke, Tom and Steiniger, Alexander and Uhrmacher, Adelinde M. and Klabunde, Anna and Willekens, Frans (2015) ML3: a language for compact modeling of linked lives in computational demography. In: Winter Simulation Conference (WSC 2015), 6-9 Dec 2015, Huntington Beach, CA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 2764-2775.

Warnke, Tom and Klabunde, Anna and Plath, Sebastian and Reinhardt, Oliver and Willekens, Frans and Uhrmacher, Adelinde M. (2015) Modelling and Simulating Decision Processes with a Domain Specific Language. In: Workshop: The science of choice - How to model the decision-making process?, 28-30 Oct 2015, Rostock, Germany.

Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2015) Syntax and Semantics of a Multi-Level Modeling Language. In: 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2015), 10-12 Jun 2015, London, UK. Proceedings, published by ACM, New York, NY, USA, pp. 133-144.

Warnke, Tom and Uhrmacher, Adelinde M. (2014) An Approach for Spatial Pattern Matching in Simulation Trajectories. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.

Warnke, Tom and Peng, Danhua and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Towards a Language for Specifying Properties of Simulation Trajectories. In: International Conference on Computational Methods in Systems Biology (CMSB 2014), 17-19 Nov 2014, Manchester, UK. Poster.

Thesis

Warnke, Tom (2021) Domain-specific Languages for Modeling and Simulation. PhD thesis, Institute for Visual and Analytic Computing, University of Rostock.

Warnke, Tom (2014) Modelchecking auf Trajektorien mit räumlichem Bezug. Masters thesis, Institute of Computer Science, University of Rostock.