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Helms, Tobias and Warnke, Tom and Maus, Carsten and Uhrmacher, Adelinde M. (2017) Semantics and Efficient Simulation Algorithms of an Expressive Multi-Level Modeling Language. ACM Transactions on Modeling and Computer Simulation (TOMACS), 27 (2), 8:1-8:25. ISSN 1049-3301 (print) 1558-1195 (online).
Maus, Carsten and Rybacki, Stefan and Uhrmacher, Adelinde M. (2011) Rule-based multi-level modeling of cell biological systems. BMC Systems Biology, 5 (166), ISSN 1752-0509 (electronic version).
Ewald, Roland and Maus, Carsten and Rolfs, Arndt and Uhrmacher, Adelinde M. (2007) Discrete event modelling and simulation in systems biology. Journal of Simulation, 1 (2), pp. 81-96. ISSN 1747-7778.
Helms, Tobias and Maus, Carsten and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Multi-level modeling and simulation of cell biological systems with ML-rules: a tutorial. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 177-191.
Nähring, Sebastian and Ewald, Roland and Uhrmacher, Adelinde M. and Maus, Carsten (2013) From standardized modeling formats to modeling languages and back - An exploration based on SBML and ML-Rules. In: Winter Simulations Conference (WSC 2013), 08-11 Dec 2013, Washington, D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 1359-1370.
Nähring, Sebastian and Maus, Carsten and Ewald, Roland and Uhrmacher, Adelinde M. (2012) Automated transformation between modeling languages with different expressiveness: challenges and results from a use case with SBML and ML-Rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 371:1-371:2. Poster.
Luboschik, Martin and Maus, Carsten and Schulz, Hans-Jörg and Schumann, Heidrun and Uhrmacher, Adelinde M. (2012) Heterogeneity-based guidance for exploring multiscale data in systems biology. In: 2nd IEEE Symposium on Biological Data Visualization (BioVis 2012), 14-15 Oct 2012, Seattle, WA, USA. Proceedings, published by IEEE, pp. 33-40.
Helms, Tobias and Himmelspach, Jan and Maus, Carsten and Oliver, Röwer and Schützel, Johannes and Uhrmacher, Adelinde M. (2012) Toward a language for the flexible observation of simulations. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 418:1-418:12.
Bittig, Arne T. and Haack, Fiete and Maus, Carsten and Uhrmacher, Adelinde M. (2011) Adapting rule-based model descriptions for simulating in continuous and hybrid space. In: 9th International Conference on Computational Methods in Systems Biology (CMSB 2011), 21-23 Sep 2011, Paris, France. Proceedings, published by ACM, NewYork, USA, pp. 161-170.
Maus, Carsten and Rybacki, Stefan and Uhrmacher, Adelinde M. (2011) Formal Rule-based Multi-Level Modeling. In: 12th International Conference on Systems Biology (ICSB 2011), 28 Aug - 01 Sep, Heidelberg - Mannheim, Germany. Poster.
Maus, Carsten and John, Mathias and Rybacki, Stefan and Uhrmacher, Adelinde M. (2010) Towards Rule-Based Multi-Level Modeling. In: 11th International Conference on Systems Biology (ICSB 2010), 10-15 Oct 2010, Edinburgh, UK. Poster.
Mazemondet, Orianne and John, Mathias and Maus, Carsten and Uhrmacher, Adelinde M. and Rolfs, Arndt (2009) Integrating Diverse Reaction Types into Stochastic Models - A Signaling Pathway Case Study in the Imperative π-Calculus. In: Winter Simulation Conference, WSC 2009, December 13-16, Austin, TX, USA. Proceedings,, pp. 932-943.
Mazemondet, Orianne and John, Mathias and Maus, Carsten and Uhrmacher, Adelinde M. and Rolfs, Arndt (2009) Modeling the Cell Cycle Dependency of the Wnt/β-catenin Signaling Pathway in the Imperative π-Calculus. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.
Henkel, Ron and Köhn, Dagmar and Peters, Andre and Maus, Carsten (2009) Similarity Measures for Computational Biological Models. In: 6th International Workshop Data Integration in the Life Sciences (DILS 2009), 20-22 Jul, Manchester, UK. Poster.
Maus, Carsten and Jeschke, Matthias and Uhrmacher, Adelinde M. (2009) Spatial Multi-Level Modelling and Simulation for Systems Biology. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.
Köhn, Dagmar and Maus, Carsten and Henkel, Ron and Kolbe, Martin (2009) Towards Enhanced Retrieval of Biological Models through Annotation-Based Ranking. In: 6th International Workshop on Data Integration in Life Science (DILS 2009), July 20-22, Manchester, UK. Proceedings,, pp. 204-219.
Maus, Carsten (2008) Component-Based Modelling of RNA Structure Folding. In: CMSB 2008: International Conference on Computational Methods in Systems Biology, October 12-15, Rostock, Germany. Proceedings,, pp. 44-62.
Köhn, Dagmar and Heuer, Andreas and Maus, Carsten (2008) Eine Datenbanklösung für Modellwiederverwendung in der Systembiologie. In: 20. GI-Workshop Grundlagen von Datenbanken, May 13-16, Apolda, Thüringen, Germany. Proceedings,, pp. 61-65.
Maus, Carsten and John, Mathias and Röhl, Mathias and Uhrmacher, Adelinde M. (2008) Hierarchical Modeling for Computational Biology. In: Formal Methods for Computational Systems Biology, 8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems, Advanced Lectures, June 2-7, Bertinoro, Italy. Proceedings,, pp. 81-124.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Jeschke, Matthias and John, Mathias and Leye, Stefan and Maus, Carsten and Röhl, Mathias and Ewald, Roland (2008) One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II. In: 1st International Workshop Formal Methods in Systems Biology, FMSB 2008, June 4-5, Cambridge, UK. Proceedings,, pp. 123-138.
Uhrmacher, Adelinde M. and Ewald, Roland and John, Mathias and Maus, Carsten and Jeschke, Matthias and Biermann, Susanne (2007) Combining micro and macro-modeling in DEVS for computational biology. In: Proceedings of the Winter Simulation Conference, WSC 2007, Washington, DC, USA, December 9-12, 2007. Proceedings,, pp. 871-880.
Ewald, Roland and Gutzeit, Enrico and Schwanke, Sebastian and Uhrmacher, Adelinde M. and Lange, Christian and Biermann, Susanne and Maus, Carsten (2006) Multi-Level Modeling with DEVS - A Critical Inspection and Steps Towards a Feasible Approach. In: Winter Simulation Conference 2006 (WSC'2006), December 03-06, Monterey, CA, USA. Poster.
Maus, Carsten (2013) Toward Accessible Multilevel Modeling in Systems Biology. A Rule-based Language Concept. Logos Verlag Berlin. ISBN 978-3-8325-3516-2.
Maus, Carsten (2013) Toward Accessible Multilevel Modeling in Systems Biology. A Rule-based Language Concept. PhD thesis, Institute of Computer Science, University of Rostock.
