 | Up a level |
Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2019) Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules. In: Modeling Biomolecular Site Dynamics. Methods in Molecular Biology, 1945 . Humana Press, New York, NY, pp. 141-160. ISBN 978-1-4939-9100-6 (print) 978-1-439-9102-0 (Online).
Budde, Kai and Helms, Tobias and Haack, Fiete and Uhrmacher, Adelinde M. (2018) Modeling long-range Wnt signaling with the domain-specific language ML-Rules. In: Workshop on "Multiscale modeling and simulations to bridge molecular and cellular scales" of the Centro di Ricerca Matematica Ennio De Giorgi, 1-5 Oct 2018, Pisa, Italy. Poster.
Helms, Tobias and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2018) Hybrid Simulation of Dynamic Reaction Networks in Multi-Level Models. In: ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2018), 23-25 May 2018, Rome, Italy. Proceedings, published by ACM, New York, NY, USA, pp. 133-144.
Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2018) Reproducible and flexible simulation experiments with ML-Rules and SESSL. Bioinformatics, 34 (8), pp. 1424-1427. ISSN 1367-4803.
Meyer, Tom and Helms, Tobias and Warnke, Tom and Uhrmacher, Adelinde M. (2018) Runtime Code Generation for Interpreted Domain-Specific Modeling Languages. In: Winter Simulation Conference (WSC 2018), 09-12 Dec 2018, Gothenburg, Sweden. Proceedings, published by IEEE, pp. 605-616.
Pierce, Maria E. and Warnke, Tom and Krumme, Uwe and Helms, Tobias and Hammer, Cornelius and Uhrmacher, Adelinde M. (2017) Developing and validating a multi-level ecological model of eastern Baltic cod (Gadus morhua) in the Bornholm Basin - a case for domain-specific languages. Ecological Modeling, 361, pp. 49-65. ISSN 0304-3800.
Helms, Tobias (2017) Simulator Adaption at Runtime for Component-Based Simulation Software. PhD thesis, Institut of Computer Science, University of Rostock.
Helms, Tobias and Warnke, Tom and Maus, Carsten and Uhrmacher, Adelinde M. (2017) Semantics and Efficient Simulation Algorithms of an Expressive Multi-Level Modeling Language. ACM Transactions on Modeling and Computer Simulation (TOMACS), 27 (2), 8:1-8:25. ISSN 1049-3301 (print) 1558-1195 (online).
Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. In: 9th EAI International Conference on Performance Evaluation Methodologies and Tools, 14-16 Dec 2015, Berlin, Germany. Proceedings, published by ICST, Brussels, Belgium, pp. 149-152.
Helms, Tobias and Mentel, Steffen and Uhrmacher, Adelinde M. (2016) Dynamic State Space Partitioning for Adaptive Simulation Algorithms. EAI Endorsed Transactions on Collaborative Computing, 16 (10), e2. ISSN 2312-8623.
Kossow, Christina and Helms, Tobias and Kreutzer, Jan M. and Martens, Alke and Uhrmacher, Adelinde M. (2016) Evaluating Different Modeling Languages Based on a User Study. In: 49th Annual Simulation Symposium (ANNS 2016), 3-6 Apr 2016, Pasadena, CA, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, 18:1-18:8.
Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2015) Automatic Runtime Adaptation for Component-Based Simulation Algorithms. ACM Transactions on Modeling and Computer Simulation (TOMACS), 26 (1), 7:1-7:24. ISSN 1049-3301 (print) 1558-1195 (online).
Helms, Tobias and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2015) Bayesian changepoint detection for generic adaptive simulation algorithms. In: 48th Annual Simulation Symposium (ANSS 2015) part of the Spring Simulation Multiconference (SpringSim 2015), 12-15 Apr, Alexandria, VA, USA. Proceedings, published by Society for Computer Simulation International, San Diego, CA, USA, pp. 62-69.
Pierce, Maria E. and Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. and Krumme, Uwe and Hammer, Cornelius (2015) Individual-based cod simulation with ML-Rules. In: Winter Simulation Conference (WSC 2015), 6-9 Dec 2015, Huntington Beach, CA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 3192-3193. Poster.
Warnke, Tom and Helms, Tobias and Uhrmacher, Adelinde M. (2015) Syntax and Semantics of a Multi-Level Modeling Language. In: 3rd ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2015), 10-12 Jun 2015, London, UK. Proceedings, published by ACM, New York, NY, USA, pp. 133-144.
Rybacki, Stefan and Helms, Tobias and Moldenhauer, Lars and Uhrmacher, Adelinde M. (2014) GPU-Based Calculation Of Trajectory Similarities. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.
Helms, Tobias and Uhrmacher, Adelinde M. (2014) Hybrid Execution of Dynamic Rule-based Multi-level Models. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.
Helms, Tobias and Maus, Carsten and Haack, Fiete and Uhrmacher, Adelinde M. (2014) Multi-level modeling and simulation of cell biological systems with ML-rules: a tutorial. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 177-191.
Helms, Tobias and Luboschik, Martin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2013) An Approximate Execution of Rule-Based Multi-level Models. In: 11th International Conference on Computational Methods in Systems Biology (CMSB 2013), 22-24 Sep 2013, Klosterneuburg, Austria. Proceedings, published by Springer, Berlin, Heidelberg, Lecture Notes in Computer Science (LNCS), volume 8130, pp. 19-32.
Peng, Danhua and Steiniger, Alexander and Helms, Tobias and Uhrmacher, Adelinde M. (2013) Towards composing ML-Rules models. In: Winter Simulation Conference (WSC 2013), 08-11 Dec 2013, Washington D.C., USA. Proceedings, published by IEEE Press, Piscataway, NJ, USA, pp. 4010-4011. Poster.
Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2013) A generic adaptive simulation algorithm for component-based simulation systems. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2013), 19-22 May 2013, Montreal, QC, Canada. Proceedings, published by ACM, NewYork, USA, pp. 11-22.
Helms, Tobias (2012) Adaptive Laufzeit-Rekonfiguration von ML-Rules Simulationen. Masters thesis, Institut für Informatik, Universität Rostock.
Helms, Tobias and Himmelspach, Jan and Maus, Carsten and Oliver, Röwer and Schützel, Johannes and Uhrmacher, Adelinde M. (2012) Toward a language for the flexible observation of simulations. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 418:1-418:12.
Helms, Tobias and Rybacki, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2012) An adaptive simulator for ML-rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 390:1-390:2. Poster.
Helms, Tobias (2011) Inkrementelle Konstruktion von Algorithmenportfolios zur Simulation. Bachelor thesis, Institut für Informatik, Universität Rostock.
