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Ainsworth, Gillian and Anderson, Darcie and Ballesteros, Marta and Bentley, Jacob and Cavieses, Ricardo and Chevallier, Adrien and Gaglioti, Martina and Márquez, Maria Gamaza and Glyki, Eirini and Gyimah, David and Hamon, Katell and Garrido, Alejandro Hidalgo and Hopkins, Stéphanie and Kastanidi, Erasmia and Kisters, Tom and Kriegl, Michael and Lehuta, Sigrid and Lincoln, Sarina and Jørgensen, Lis Lindal and Llope, Marcos and Macher, Claire and Makris, Jelto and Martins, Irene and Meerhoff, Erika and Morsbach, Samuel and Moullec, Fabien and Seck, Mamadou Ndiaw and Pace, Matthew and Peixoto, Ualerson and Perryman, Holly Ann and Pierce, Maria E. and Planque, Benjamin and Reid, David and Gutierrez, Alfredo Santiago Garcia de Vinuesa and Scholte, Charlotte and Steins, Nathalie and Thebaud, Oliver and Zafimamatrapehy, Deutz (2025) Workshop on Participatory Modelling (WKParticipatoryModelling; outputs from 2024 meeting). Project Report. ICES Scientific Reports 7:75, 52pp..
Burrage, Kevin and Burrage, Pamela M. and Kreikemeyer, Justin N. and Uhrmacher, Adelinde M. and Weerasinnghe, Hasitha N. (2025) Learning Surrogate Equations for the Analysis of an Agent-Based Cancer Model. Frontiers in Applied Mathematics and Statistics - Mathematical Biology, 11, ISSN 2297-4687.
Cibulski, Lena and Haack, Fiete and Uhrmacher, Adelinde and Bruckner, Stefan (2025) Visual Analysis of Time-Dependent Observables in Cell Signaling Simulations. In: Eurographics Workshop on Visual Computing for Biology and Medicine 2025, 02-03 Oct 2025, Delft, The Netherlands.
Fiorentino, Dario and Núñez-Riboni, Ismael and Pierce, Maria E. and Oesterwind, Daniel and Akimova, Anna (2025) Improving species distribution models for climate change studies: ecological plausibility and performance metrics. Ecological Modelling, 508, p. 111207. ISSN 03043800.
Günster, Jasper (2025) Parallele Koordinaten als Visual Analytics Tool zur Spezifikation und Analyse von Simulationsexperimenten. Bachelor thesis, Institute for Visual and Analytic Computing, University of Rostock.
Kreikemeyer, Justin N. and Jankowski, Miłosz and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2025) Synopsis: Using (Not-so) Large Language Models to Generate Simulation Models in a Formal DSL: A Study on Reaction Networks. In: 39th ACM SIGSIM PADS, 23-26 Jun 2025, Santa Fe, New Mexico, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY, USA, pp. 56-57.
Kreikemeyer, Justin N. and Jankowski, Miłosz and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2025) Using (Not-so) Large Language Models to Generate Simulation Models in a Formal DSL: A Study on Reaction Networks. ACM Transactions on Modeling and Computer Simulation (TOMACS) for the special issue on PADS 2025, 35 (4), ISSN 1049-3301 (print) 1558-1195 (online).
Lewin, Wolf-Christian and Pierce, Maria E. and Arlinghaus, Robert and Weltersbach, Marc Simon and Strehlow, Harry V. (2025) Stakeholder workshops on western Baltic cod fisheries–conflict and consensus in the face of a highly dynamic ecosystem. Biological Conservation, 302, p. 110983. ISSN 0006-3207.
Martin, Jan Niklas (2025) Specifying and Communicating the Semantics of Stylized Facts. Masters thesis, Institute for Visual and Analytic Computing, University of Rostock.
Martin, Jan Niklas and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2025) A Quantitative Metric to Evaluate the Satisfaction of Stylized Facts. In: 1st International Workshop on Behavioural Metrics and Quantitative Logics, 25 August 2025, Aarhus, Denmark.
Page, Ernest H. and Uhrmacher, Adelinde M. (2025) SIGSIM-PADS '25: Proceedings of the 39th ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. Association for Computing Machinery (ACM), New York, NY, USA. ISBN 9798400715914.
Ruscheinski, Andreas and Wolpers, Anja and Henning, Philipp and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2025) SIMPROV: Provenance capturing for simulation studies. PLoS One, 20 (7), e0327607. ISSN 1932-6203.
Uhrmacher, Adelinde M. and Wolpers, Anja and Kreikemeyer, Justin N. (2025) Combining Natural Language and Time Series to Infer Reaction Networks. In: 23rd International Conference on Computational Methods in Systems Biology (CMSB 2025), 10-12 September, Lyon, France. Poster.
Wilsdorf, Pia and Henning, Philipp and Kreikemeyer, Justin N. and Kliefoth, Marcel and Baltrusch, Simone and Uhrmacher, Adelinde M. (2025) Self-Adaptive Simulation Models: A Case Study in Cell Biology. In: 28th International Symposium on Distributed Simulation and Real Time Applications (DS-RT), 17-19 September 2025, Prag, Tschechische Republik. Proceedings, published by IEEE, pp. 1-8.
Wolpers, Anja and Helms, Tobias and Bohk-Ewald, Christina and Uhrmacher, Adelinde M. (2025) Disease-based Phenotypical Gene Prioritization. In: 23rd International Conference on Computational Methods in Systems Biology (CMSB 2025), 10-12 September, Lyon, France. Poster.
Wolpers, Anja and Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2025) Goal-oriented Generation of Simulation Experiments. In: 2025 Winter Simulation Conference (WSC), 7-10 Dec 2025, Seatle, Washington.
Zschaler, Steffen and Wilsdorf, Pia and Goldfrey, Thomas and Uhrmacher, Adelinde M. (2025) Dialectic Models for Documenting and Conducting Simulation Studies: Exploring Feasibility. In: 2025 Winter Simulation Conference (WSC), 7-10 Dec 2025, Seatle, Washington.
Zschaler, Steffen and Wilsdorf, Pia and Goldfrey, Thomas and Uhrmacher, Adelinde M. (2025) Towards dialectic models for documenting and conducting simulation studies: A vision. In: 39th ACM SIGSIM PADS, 23-26 Jun 2025, Santa Fe, New Mexico, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY, USA, pp. 58-62.
van der Wall, Robin (2025) Vergleich von Methoden zur kombinierten Struktur- und Parameterinferenz von Reaktionsmodellen. Bachelor thesis, Institute for Visual and Analytic Computing, University of Rostock.
