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Budde, Kai and Smith, Jacob and Wilsdorf, Pia and Haack, Fiete and Uhrmacher, Adelinde M. (2021) Relating simulation studies by provenance—Developing a family of Wnt signaling models. PLoS Computational Biology, 17 (8), pp. 1-21. ISSN 1553-7358 (print) 1553-734X (online).
Foguelman, Daniel and Henning, Philipp and Uhrmacher, Adelinde M. and Castro, Rodrigo (2021) EB-DEVS: A formal framework for modeling and simulation of emergent behavior in dynamic complex systems. Journal of Computational Science, 53, p. 101387. ISSN 18777503.
Haack, Fiete and Köster, Till and Uhrmacher, Adelinde M. (2021) Receptor/raft ratio is a determinant for LRP6 phosphorylation and WNT/β-catenin signaling. Frontiers in Cell and Developmental Biology, 9, p. 2085. ISSN 2296-634X.
Johnson, Margaret E. and Chen, Athena and Faeder, James R. and Henning, Philipp and Moraru, Ion I. and Meier-Schellersheim, Martin and Murphy, Robert F. and Prüstel, Thorsten and Theriot, Julie A. and Uhrmacher, Adelinde M. (2021) Quantifying the Roles of Space and Stochasticity in Computer Simulations for Cell Biology and Cellular Biochemistry. Molecular Biology of the Cell, 32 (2), pp. 186-210. ISSN 1059-1524.
Lewin, Wolf-Christian and Weltersbach, Marc Simon and Haase, Kevin and Riepe, Carsten and Skov, Christian and Gundelund, Casper and Strehlow, Harry V. and Gibbs, Mark (2021) Comparing on-site and off-site survey data to investigate survey biases in recreational fisheries data. ICES Journal of Marine Science, 78 (7), pp. 2528-2546. ISSN 1054-3139.
Lewin, Wolf-Christian and Weltersbach, Marc Simon and Haase, Kevin and Strehlow, Harry V. (2021) Who travels how far: German Baltic sea anglers’ travel distances as precondition for fisheries management and coastal spatial planning. Ocean & Coastal Management, 209, e105640. ISSN 09645691.
Nguyen, Quang Anh Pham and Andelfinger, Philipp and Tan, Wen Jun and Cai, Wentong and Knoll, Alois (2021) Transitioning Spiking Neural Network Simulators to Heterogeneous Hardware. ACM Transactions on Modeling and Computer Simulation (TOMACS), 31 (2), pp. 1-26. ISSN 1049-3301 (print) 1558-1195 (online).
Ruscheinski, Andreas and Reimler, Anna Lena and Ewald, Roland and Uhrmacher, Adelinde M. (2021) VPMBench: a test bench for variant prioritization methods. BMC Bioinformatics, 22 (1), p. 541. ISSN 1471-2105.
Zimmermann, Julius and Budde, Kai and Arbeiter, Nils and Molina, Francia and Storch, Alexander and Uhrmacher, Adelinde M. and van Rienen, Ursula (2021) Using a digital twin of an electrical stimulation device to monitor and control the electrical stimulation of cells in vitro. Frontiers in Bioengineering and Biotechnology, 9, ISSN 2296-4185.
Andelfinger, Philipp (2021) Differentiable Agent-Based Simulation for Gradient-Guided Simulation-Based Optimization. In: 2021 ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (SIGSIM-PADS'21), 31 May - 02 June, Suffolk, Virginia, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY, USA, pp. 27-38.
Andelfinger, Philipp and Uhrmacher, Adelinde M. (2021) Optimistic Parallel Simulation of Tightly Coupled Agents in Continuous Time. In: The 25th International Symposium on Distributed Simulation and Real Time Applocations (IEEE/ACM DS-RT 2021), 27-29 Sep 2021, Valencia, Spain. Proceedings, published by IEEE Computer Society, Los Alamitos, CA, USA, pp. 1-9.
Bijak, Jakub and Grow, André and Higham, Philip A. and Hilton, Jason D. and Hinsch, Martin and Lipscombe, Kim and Nurse, Sarah and Prike, Toby and Reinhardt, Oliver and Uhrmacher, Adelinde M. (2021) Teaching A Modelling Process: Reflections From an Online Course. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.
Heß, Kristina and Reinhardt, Oliver and Himmelspach, Jan and Uhrmacher, Adelinde M. (2021) A Generalized Population Synthesis Approach for Agent-based Models. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.
Kreikemeyer, Justin N. and Köster, Till and Uhrmacher, Adelinde M. and Warnke, Tom (2021) Inferring Dependency Graphs for Agent-based Models Using Aspect-oriented Programming. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.
Li, Junjiang and Köster, Till and Giabbanelli, Philippe J. (2021) Design and evaluation of update schemes to optimize asynchronous Cellular Automata with random or cyclic orders. In: The 25th International Symposium on Distributed Simulation and Real Time Applocations (IEEE/ACM DS-RT 2021), 27-29 Sep 2021, Valencia, Spain. Proceedings, published by IEEE Computer Society, Los Alamitos, CA, USA, pp. 1-8.
Meyer, Tom and Ruscheinski, Andreas and Wilsdorf, Pia and Uhrmacher, Adelinde M. (2021) Simulation-Supported Engineering of Self-Adaptive Software Systems. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.
Tan, Wen Jun and Andelfinger, Philipp and Eckhoff, David and Cai, Wentong and Knoll, Alois (2021) Causality and Consistency of State Update Schemes in Synchronous Agent-based Simulations. In: 2021 ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, 31 May - 02 June, Suffolk, Virginia, USA. Proceedings, published by Association for Computing Machinery (ACM), New York, NY, USA, pp. 57-68.
Warnke, Tom and Uhrmacher, Adelinde M. (2021) Nonlinear pattern matching in rule-based modeling languages. In: 19th International Conference on Computational Methods in Systems Biology (CMSB 2021), 22-24 Sep 2021, Bordeaux, France. Proceedings, published by Springer International Publishing, Cham, pp. 198-214.
Wilsdorf, Pia and Fischer, Nadine and Uhrmacher, Adelinde M. (2021) Exploiting Provenance and Ontologies in Supporting Best Practices for Simulation Experiments: A Case Study on Sensitivity Analysis. In: Winter Simulation Conference (WSC 2021), 13-16 Dec 2021, Phoenix, Arizona, USA. Proceedings, published by IEEE Press, pp. 1-12.
Herrmann, Leon (2021) Parallele Simulation von Ensemblen stochastischer Simulationen auf Grafikkarten. Bachelor thesis, Institute for Visual and Analytic Computing, University of Rostock.
Heß, Kristina (2021) A Generalized Population Synthesis Approach for Agent-Based Models. Masters thesis, Graduate School Hamburg, Software Engineering, Nordakademie.
Kreikemeyer, Justin N. (2021) Inferring Dependency Graphs for Agent-Based Models using Aspect-Oriented Programming. Bachelor thesis, Institute for Visual and Analytic Computing, University of Rostock.
Warnke, Tom (2021) Domain-specific Languages for Modeling and Simulation. PhD thesis, Institute for Visual and Analytic Computing, University of Rostock.
