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Priami, Corrado and Breitling, Rainer and Gilbert, David and Heiner, Monika and Uhrmacher, Adelinde M., eds. (2010) Transactions on Computational Systems Biology XII. Special Issue on Modeling Methodologies. Lecture Notes in Computer Science, 5945 . Springer. ISBN 978-3-642-11711-4 (Print) 978-3-642-11712-1 (Online).
Bittig, Arne T. and Jeschke, Matthias and Uhrmacher, Adelinde M. (2010) Towards Modelling and Simulation of Crowded Environments in Cell Biology. In: International Conference of Numerical Analysis and Applied Mathematics (ICNAAM 2010), 19-25 Sep 2010, Rhodes, Greece. Proceedings, published by AIP Conference Proceedings, 1281(1), pp. 1326-1329.
Bittig, Arne T. and Uhrmacher, Adelinde M. (2010) Spatial modeling in cell biology at multiple levels. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEE, Electronic ISSN: 1558-4305, pp. 608-619.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics, 11 (3), pp. 290-300. ISSN 1467-5463.
Ewald, Roland and Schulz, Rene and Uhrmacher, Adelinde M. (2010) Selecting Simulation Algorithm Portfolios by Genetic Algorithms. In: 24th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2010), 17-19 May 2010, Atlanta, Georgia, USA. Proceedings, published by IEEE, Print ISSN: 1087-4097, pp. 48-56.
Haack, Fiete and Leye, Stefan and Uhrmacher, Adelinde M. (2010) A flexible architecture for modeling and simulation of diffusional association. In: 3rd Workshop From Biology To Concurrency and back, FBTC 2010, 27 Mar 2010, Paphos, Cyprus. Proceedings, published by Electronic Proceedings in Theoretical Computer Science (EPTCS), 19, pp. 70-84.
Haack, Fiete and Röblitz, Susanna and Scharkoi, Olga and Schmidt, Burkhard and Weber, Marcus (2010) Adaptive Spectral Clustering for Conformation Analysis. In: International Conference of numerical Analysis and Applied Mathematics (ICNAAM 2010), 19-25 Sep 2010, Rhodes, Greece. Proceedings, published by American Institute of Physics, AIP Conference Proceedings, volume 1281, pp. 1585-1588.
Himmelspach, Jan and Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Enhancing the Scalability of Simulations by Embracing Multiple Levels of Parallelization. In: Second International Workshop on High Performance Computational Systems Biology, 30 Sep - 01 Oct 2010, Twente, The Netherlands. Proceedings, published by IEEE, pp. 57-66.
Himmelspach, Jan and Röhl, Mathias and Uhrmacher, Adelinde M. (2010) Component-Based Models and Simulations for Supporting Valid Multi-Agent System Simulations. Applied Artificial Intelligence, 24 (5), pp. 414-442. ISSN 0883-9514 (print) 1087-6545 (online).
Hoffmann, Eik and Marion, Sabrina and Mishra, Bibhuti Bhusan and John, Mathias and Kratzke, Ramona and Ahmad, Syed Furquan and Holzer, Daniela and Anand, Paras Kumar and Weiss, Dieter G. and Griffiths, Gareth and Kuznetsov, Sergei A. (2010) Initial receptor–ligand interactions modulate gene expression and phagosomal properties during both early and late stages of phagocytosis. European Journal of Cell Biology, 89 (9), pp. 693-704. ISSN 01719335.
Jeschke, Matthias (2010) Efficient non-spatial and spatial simulation of biochemical reaction networks. PhD thesis, Institute of Computer Science, University of Rostock.
John, Mathias (2010) Reaction Constraints for the Pi-Calculus - A Language for the Stochastic and Spatial Modeling of Cell-Biological Processes. PhD thesis, Institute of Computer Science, University of Rostock.
John, Mathias and Lhoussaine, Cédric and Niehren, Joachim and Uhrmacher, Adelinde M. (2010) The Attributed Pi-Calculus with Priorities. Transactions on Computational Systems Biology 12, pp. 13-76.
Junemann, Konrad and Andelfinger, Philipp and Dinger, Jochen and Hartenstein, Hannes (2010) BitMON: A Tool for Automated Monitoring of the BitTorrent DHT. In: IEEE Tenth International Conference on Peer-to-Peer Computing (P2P), 25-27 Aug 2010, Delft, Netherlands. Proceedings, published by IEEE, pp. 1-2.
Leye, Stefan and John, Mathias and Uhrmacher, Adelinde M. (2010) A flexible architecture for performance experiments with the pi-Calculus and its extensions. In: 3rd International Conference on Simulation Tools and Techniques (SIMUTOOLS 2010), 15-19 Mar 2010, Torremolinos, Malaga, Spain. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 35:1-35:10.
Leye, Stefan and Mazemondet, Orianne and Uhrmacher, Adelinde M. (2010) Parallel Analysis with FAMVal to Speed Up Simulation-based Model Checking. In: Fourth UKSim European Symposium on Computer Modeling and Simulation (EMS 2010), 17-19 Nov 2010, Pisa, Italy. Proceedings, published by IEEE, pp. 344-350.
Leye, Stefan and Uhrmacher, Adelinde M. (2010) A flexible and extensible architecture for experimental model validation. In: 3rd International Conference on Simulation Tools and Techniques (SIMUTOOLS 2010), 15-19 Mar 2010, Torremolinos, Malaga, Spain. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 65:1-65:10.
Marquardt, Florian (2010) Dienstekomposition in intelligenten Umgebungen basierend auf KI-Planung. PhD thesis, Institut für Informatik, Universität Rostock.
Maus, Carsten and John, Mathias and Rybacki, Stefan and Uhrmacher, Adelinde M. (2010) Towards Rule-Based Multi-Level Modeling. In: 11th International Conference on Systems Biology (ICSB 2010), 10-15 Oct 2010, Edinburgh, UK. Poster.
Rybacki, Stefan and Himmelspach, Jan and Seib, Enrico and Uhrmacher, Adelinde M. (2010) Using workflows in M&S software. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 535-545.
Seib, Enrico (2010) Arbeitsabläufe in der Modellierung und Simulation. Masters thesis, Institut für Informatik, Universität Rostock.
Steiniger, Alexander and Uhrmacher, Adelinde M. (2010) Modeling and simulation for user assistance in smart environments. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 490-499.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Ewald, Roland (2010) Effective and Efficient Modeling and Simulation with DEVS Variants. In: Discrete-Event Modeling and Simulation. CRC Press, pp. 139-176. ISBN 978-1-4200-7233-4 (print) 978-1-4200-7234-1 (eBook).
Zinn, Sabine (2010) A Mate-Matching Algorithm For Continuous-Time Microsimulation Models. In: EUROSTAT: Work session on demographic projections, 28-30 Apr 2010, Lisbon, Portugal. Proceedings, published by Publications Office of the European Union, Luxembourg, pp. 491-509.
Zinn, Sabine and Gampe, Jutta and Himmelspach, Jan and Uhrmacher, Adelinde M. (2010) A DEVS model for demographic microsimulation. In: Spring Simulation Multiconference (SpringSim 2010), 11-15 Apr 2010, Orlando, Florida, USA. Proceedings, published by Society for Computer Simulation International (SCSI), San Diego, CA, USA, 146:1-146:8.
