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Kossow, Christina and Rybacki, Stefan and Millat, Thomas and Rateitschak, Katja and Jaster, Robert and Uhrmacher, Adelinde M. and Wolkenhauer, Olaf (2015) An explicit numerical scheme to efficiently simulate molecular diffusion in environments with dynamically changing barriers. Mathematical and Computer Modelling of Dynamical Systems, 21 (6), pp. 535-559. ISSN 1387-3954 (print) 1744-5051 (online).
Eichner, Christian and Bittig, Arne T. and Schumann, Heidrun and Tominski, Christian (2014) Analyzing simulations of biochemical systems with feature-based visual analytics. Computers & Graphics, 38, pp. 18-26. ISSN 00978493.
Luboschik, Martin and Rybacki, Stefan and Haack, Fiete and Schulz, Hans-Jörg (2014) Supporting the integrated visual analysis of input parameters and simulation trajectories. Computers & Graphics, 39, pp. 37-47. ISSN 00978493.
Moldenhauer, Lars (2014) GPU-basierte Berechnung von Ähnlichkeitsmaßen für Trajektorien. Bachelor thesis, Institut für Informatik, Universität Rostock.
Rybacki, Stefan and Haack, Fiete and Wolf, Karsten and Uhrmacher, Adelinde M. (2014) Developing simulation models - from conceptual to executable model and back - an artifact-based workflow approach. In: 7th International ICST Conference on Simulation Tools and Techniques (SIMUTools 2014), 17-19 Mar 2014, Lisbon, Portugal. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, pp. 21-30.
Rybacki, Stefan and Helms, Tobias and Moldenhauer, Lars and Uhrmacher, Adelinde M. (2014) GPU-Based Calculation Of Trajectory Similarities. In: Winter Simulation Conference (WSC 2014), 7-10 Dec 2014, Savannah, GA, USA. Poster.
John, Mathias and Schulz, Hans-Jörg and Schumann, Heidrun and Uhrmacher, Adelinde M. and Unger, Andrea (2013) Constructing and visualizing chemical reaction networks from pi-calculus models. Formal Aspects of Computing, 25 (5), pp. 723-742. ISSN 0934-5043.
Eichner, Christian and Bittig, Arne T. and Schumann, Heidrun and Tominski, Christian (2013) Feature-Based Visual Analytics for Studying Simulations of Dynamic Bi-Stable Spatial Systems. In: EuroVis Workshop on Visual Analytics (EuroVA), 17-21 Jun 2013, Leipzig, Germany.
Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2013) A generic adaptive simulation algorithm for component-based simulation systems. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2013), 19-22 May 2013, Montreal, QC, Canada. Proceedings, published by ACM, NewYork, USA, pp. 11-22.
Helms, Tobias and Luboschik, Martin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2013) An Approximate Execution of Rule-Based Multi-level Models. In: 11th International Conference on Computational Methods in Systems Biology (CMSB 2013), 22-24 Sep 2013, Klosterneuburg, Austria. Proceedings, published by Springer, Berlin, Heidelberg, Lecture Notes in Computer Science (LNCS), volume 8130, pp. 19-32.
Helms, Tobias and Himmelspach, Jan and Maus, Carsten and Oliver, Röwer and Schützel, Johannes and Uhrmacher, Adelinde M. (2012) Toward a language for the flexible observation of simulations. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, Online ISSN: 0891-7736, 418:1-418:12.
Luboschik, Martin and Maus, Carsten and Schulz, Hans-Jörg and Schumann, Heidrun and Uhrmacher, Adelinde M. (2012) Heterogeneity-based guidance for exploring multiscale data in systems biology. In: 2nd IEEE Symposium on Biological Data Visualization (BioVis 2012), 14-15 Oct 2012, Seattle, WA, USA. Proceedings, published by IEEE, pp. 33-40.
Luboschik, Martin and Rybacki, Stefan and Ewald, Roland and Schwarze, Benjamin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2012) Interactive visual exploration of simulator accuracy: a case study for Stochastic Simulation Algorithms. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 419:1-419:12.
Luboschik, Martin and Tominski, Christian and Bittig, Arne T. and Uhrmacher, Adelinde M. and Schumann, Heidrun (2012) Towards Interactive Visual Analysis of Microscopic-Level Simulation Data. In: Interactive Visual Analysis of Data (SIGRAD 2012), 29-30 Nov 2012, Växjö, Sweden. Proceedings, published by Linköping University Electronic Press, Linköpings universitet, Sweden, pp. 91-94.
Rybacki, Stefan and Himmelspach, Jan and Uhrmacher, Adelinde M. (2012) Using workflows to control the experiment execution in modeling and simulation software. In: 5th International ICST Conference on Simulation Tools and Techniques (SIMUTools 2012), 19-23 Mar 2012, Desenzano del Garda, Italy. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, pp. 93-102.
Rybacki, Stefan and Leye, Stefan and Himmelspach, Jan and Uhrmacher, Adelinde M. (2012) Template and Frame Based Experiment Workflows in Modeling and Simulation Software with WORMS. In: Eighth IEEE World Congress on Services (SERVICES 2012), 24-29 Jun 2012, Honolulu, HI, USA. Proceedings, published by IEEE, pp. 25-32.
Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2011) Exploring the performance of spatial stochastic simulation algorithms. Journal of Computational Physics, 230 (7), pp. 2562-2574. ISSN 0021-9991.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics, 11 (3), pp. 290-300. ISSN 1467-5463.
Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. (2008) An Algorithm Selection Approach for Simulation Systems. In: 22nd International Workshop on Principles of Advanced and Distributed Simulation, PADS 2008, June 3-6, Rome, Italy. Proceedings,, pp. 91-98.
