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Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2011) Exploring the performance of spatial stochastic simulation algorithms. Journal of Computational Physics, 230 (7), pp. 2562-2574. ISSN 0021-9991.
Jeschke, Matthias (2010) Efficient non-spatial and spatial simulation of biochemical reaction networks. PhD thesis, Institute of Computer Science, University of Rostock.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics, 11 (3), pp. 290-300. ISSN 1467-5463.
Bittig, Arne T. and Jeschke, Matthias and Uhrmacher, Adelinde M. (2010) Towards Modelling and Simulation of Crowded Environments in Cell Biology. In: International Conference of Numerical Analysis and Applied Mathematics (ICNAAM 2010), 19-25 Sep 2010, Rhodes, Greece. Proceedings, published by AIP Conference Proceedings, 1281(1), pp. 1326-1329.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2009) Performance Issues in Evaluating Models and Designing Simulation Algorithms. In: International Workshop on High Performance Computational Systems Biology (HiBi 2009), 14-16 Oct 2010, Trento, Italy. Proceedings, published by IEEE, pp. 71-80.
Maus, Carsten and Jeschke, Matthias and Uhrmacher, Adelinde M. (2009) Spatial Multi-Level Modelling and Simulation for Systems Biology. In: CMSB 2009: 7th International Conference on Computational Methods in Systems Biology, August 31 - September 1, Bologna, Italy. Poster.
Leye, Stefan and Himmelspach, Jan and Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A Grid-Inspired Mechanism for Coarse-Grained Experiment Execution. In: 12th IEEE/ACM International Symposium on Distributed Simulation and Real-Time Applications, 2008, October 27-29, Vancouver, BC, Canada. Proceedings,, pp. 7-16.
Jeschke, Matthias and Uhrmacher, Adelinde M. (2008) Multi-resolution spatial simulation for molecular crowding. In: Winter Simulation Conference, WSC 2008, December 7-10, Miami, Florida, USA. Proceedings,, pp. 1384-1392.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Jeschke, Matthias and John, Mathias and Leye, Stefan and Maus, Carsten and Röhl, Mathias and Ewald, Roland (2008) One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II. In: 1st International Workshop Formal Methods in Systems Biology, FMSB 2008, June 4-5, Cambridge, UK. Proceedings,, pp. 123-138.
Jeschke, Matthias and Park, Alfred and Ewald, Roland and Fujimoto, Richard and Uhrmacher, Adelinde M. (2008) Parallel and Distributed Spatial Simulation of Chemical Reactions. In: 22st International Workshop on Principles of Advanced and Distributed Simulation, PADS 2008, June 3-6, Roma, Italy. Proceedings,, pp. 51-59.
Jeschke, Matthias and Ewald, Roland and Park, Alfred and Fujimoto, Richard and Uhrmacher, Adelinde M. (2008) A parallel and distributed discrete event approach for spatial cell-biological simulations. SIGMETRICS Performance Evaluation Review, 35 (4), pp. 22-31.
Uhrmacher, Adelinde M. and Ewald, Roland and John, Mathias and Maus, Carsten and Jeschke, Matthias and Biermann, Susanne (2007) Combining micro and macro-modeling in DEVS for computational biology. In: Proceedings of the Winter Simulation Conference, WSC 2007, Washington, DC, USA, December 9-12, 2007. Proceedings,, pp. 871-880.
