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Köster, Till and Henning, Philipp and Warnke, Tom and Uhrmacher, Adelinde (2024) Expressive rule-based modeling and fast simulation for dynamic compartments. PLOS ONE, 19 (10), e0312813. ISSN 1932-6203.
Henning, Philipp and Köster, Till and Haack, Fiete and Burrage, Kevin and Uhrmacher, Adelinde M. (2023) Implications of different membrane compartmentalization models in particle-based in silico studies. Royal Society Open Science, 10 (7), e221177. ISSN 2054-5703.
Johnson, Margaret E. and Chen, Athena and Faeder, James R. and Henning, Philipp and Moraru, Ion I. and Meier-Schellersheim, Martin and Murphy, Robert F. and Prüstel, Thorsten and Theriot, Julie A. and Uhrmacher, Adelinde M. (2021) Quantifying the Roles of Space and Stochasticity in Computer Simulations for Cell Biology and Cellular Biochemistry. Molecular Biology of the Cell, 32 (2), pp. 186-210. ISSN 1059-1524.
Foguelman, Daniel and Henning, Philipp and Uhrmacher, Adelinde M. and Castro, Rodrigo (2021) EB-DEVS: A formal framework for modeling and simulation of emergent behavior in dynamic complex systems. Journal of Computational Science, 53, p. 101387. ISSN 18777503.
Köster, Till and Henning, Philipp and Uhrmacher, Adelinde M. (2019) Potential based, spatial simulation of dynamically nested particles. BMC Bioinformatics, 20 (607), ISSN 1471-2105.
Seiffert, Lennart and Henning, Philipp and Rupp, Philipp and Zherebtsov, Sergey and Hommelhoff, Peter and Kling, Matthias F. and Fennel, Thomas (2017) Trapping field assisted backscattering in strong-field photoemission from dielectric nanospheres. Journal of Modern Optics, 64 (10-11), pp. 1096-1103. ISSN 0950-0340.
Ruscheinski, Andreas and Wolpers, Anja and Henning, Philipp and Warnke, Tom and Haack, Fiete and Uhrmacher, Adelinde M. (2020) Pragmatic Logic-based Spatio-temporal Pattern Checking in Particle-based Models. In: Winter Simulation Conference (WSC 2020), 13-16 Dec 2020, Orlando, Florida, USA. Proceedings, published by IEEE Computer Society, pp. 2245-2256.
Henning, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2018) Challenges in reproducing an ODE vesicle transport model with particles in continuous space. In: Multiscale modeling and simulations to bridge molecular and cellular scales, 1-5 Oct 2018, Pisa, Italy. Poster.
Henning, Philipp and Köster, Till and Uhrmacher, Adelinde M. (2017) Idiosyncracies in Multi-Spatial Modeling. In: 15th Conference on Computational Methods in Systems Biology (CMSB 2017), 27-29 Sep 2017, Darmstadt, Germany. Poster.
