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Ruscheinski, Andreas and Reimler, Anna Lena and Ewald, Roland and Uhrmacher, Adelinde M. (2021) VPMBench: a test bench for variant prioritization methods. BMC Bioinformatics, 22 (1), p. 541. ISSN 1471-2105.
Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2015) Automatic Runtime Adaptation for Component-Based Simulation Algorithms. ACM Transactions on Modeling and Computer Simulation (TOMACS), 26 (1), 7:1-7:24. ISSN 1049-3301 (print) 1558-1195 (online).
Haack, Fiete and Lemcke, Heiko and Ewald, Roland and Rharass, Tareck and Uhrmacher, Adelinde M. (2015) Spatio-temporal Model of Endogenous ROS and Raft-Dependent WNT/Beta-Catenin Signaling Driving Cell Fate Commitment in Human Neural Progenitor Cells. PLoS Computational Biology, 11 (3), e104106. ISSN 1553-7358 (print) 1553-734X (online).
Leye, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2014) Composing Problem Solvers for Simulation Experimentation: A Case Study on Steady State Estimation. PLoS ONE, 9 (4), e91948. ISSN 1932-6203.
Ewald, Roland and Uhrmacher, Adelinde M. (2014) SESSL: A domain-specific language for simulation experiments. ACM Transactions on Modeling and Computer Simulation (TOMACS), 24 (2), 11:1-11:25. ISSN 1049-3301 (print) 1558-1195 (online).
Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2011) Exploring the performance of spatial stochastic simulation algorithms. Journal of Computational Physics, 230 (7), pp. 2562-2574. ISSN 0021-9991.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics, 11 (3), pp. 290-300. ISSN 1467-5463.
Chen, Dan and Ewald, Roland and Theodoropoulos, Georgios K. and Minson, Rob and Oguara, Ton and Lees, Michael and Logan, Brian S. and Uhrmacher, Adelinde M. (2008) Data access in distributed simulations of multi-agent systems. Journal of Systems and Software, 81 (12), pp. 2345-2360.
John, Mathias and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A Spatial Extension to the π Calculus. Electr. Notes Theor. Comput. Sci., 194 (3), pp. 133-148.
Jeschke, Matthias and Ewald, Roland and Park, Alfred and Fujimoto, Richard and Uhrmacher, Adelinde M. (2008) A parallel and distributed discrete event approach for spatial cell-biological simulations. SIGMETRICS Performance Evaluation Review, 35 (4), pp. 22-31.
Ewald, Roland and Maus, Carsten and Rolfs, Arndt and Uhrmacher, Adelinde M. (2007) Discrete event modelling and simulation in systems biology. Journal of Simulation, 1 (2), pp. 81-96. ISSN 1747-7778.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Ewald, Roland (2010) Effective and Efficient Modeling and Simulation with DEVS Variants. In: Discrete-Event Modeling and Simulation. CRC Press, pp. 139-176. ISBN 978-1-4200-7233-4 (print) 978-1-4200-7234-1 (eBook).
Theodoropoulos, Georgios K. and Minson, Rob and Ewald, Roland and Lees, Michael (2009) Simulation Engines for Multi-Agent Systems. In: Multi-Agent Systems: Simulation and Applications. Computational Analysis, Synthesis, & Design Dynamic Models Series, 200918 . CRC Press, pp. 77-105. ISBN 978-1-4200-7023-1 (print) 978-1-4200-7024-8 (eBook).
Ruscheinski, Andreas and Reimler, Anna Lena and Ewald, Roland and Uhrmacher, Adelinde M. (2022) Towards Analyzing the Reclassification Dynamics of ClinVar Variants. In: CMSB 2022: 20th International Conference on Computational Methods in Systems Biology, 14-16 September 2022, Bucharest, Romania. Poster.
Peng, Danhua and Ewald, Roland and Uhrmacher, Adelinde M. (2014) Towards semantic model composition via experiments. In: SIGSIM Principles of Advanced Discrete Simulation (PADS 2014), 18-21 May 2014, Denver, CO, USA. Proceedings, published by ACM, NewYork, USA, pp. 151-162.
Ewald, Roland (2014) Using AI Planning to Automate the Performance Analysis of Simulators. In: 7th International ICST Conference on Simulation Tools and Techniques (SIMUTools 2014), 17-19 Mar 2014, Lisbon, Portugal. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, pp. 195-200.
Wienß, Jonathan and Stein, Michael and Ewald, Roland (2013) Evaluating simulation software components with player rating systems. In: 6th International ICST Conference on Simulation Tools and Techniques (SIMUTools), 05-08 Mar 2013, Cannes, French Riviera. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, pp. 41-50.
Nähring, Sebastian and Ewald, Roland and Uhrmacher, Adelinde M. and Maus, Carsten (2013) From standardized modeling formats to modeling languages and back - An exploration based on SBML and ML-Rules. In: Winter Simulations Conference (WSC 2013), 08-11 Dec 2013, Washington, D.C., USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305 Print ISSN: 0891-7736, pp. 1359-1370.
Schützel, Johannes and Ewald, Roland and Uhrmacher, Adelinde M. (2013) Towards a general foundation for formalism-specific instrumentation languages. In: Winter Simulation Conference (WSC 2013), 08-11 Dec 2013, Washington D.C., USA. Proceedings, published by IEEE Press, Piscataway, NJ, USA, pp. 4008-4009. Poster.
Helms, Tobias and Ewald, Roland and Rybacki, Stefan and Uhrmacher, Adelinde M. (2013) A generic adaptive simulation algorithm for component-based simulation systems. In: SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS 2013), 19-22 May 2013, Montreal, QC, Canada. Proceedings, published by ACM, NewYork, USA, pp. 11-22.
Engelke, Robert and Ewald, Roland (2012) Configuring simulation algorithms with ParamILS. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 391:1-391:2. Poster.
Bohk, Christina and Rau, Roland and Ewald, Roland (2012) Towards a generalized subpopulation support for stochastic population projections. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 388:1-388:2. Poster.
Nähring, Sebastian and Maus, Carsten and Ewald, Roland and Uhrmacher, Adelinde M. (2012) Automated transformation between modeling languages with different expressiveness: challenges and results from a use case with SBML and ML-Rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 371:1-371:2. Poster.
Luboschik, Martin and Rybacki, Stefan and Ewald, Roland and Schwarze, Benjamin and Schumann, Heidrun and Uhrmacher, Adelinde M. (2012) Interactive visual exploration of simulator accuracy: a case study for Stochastic Simulation Algorithms. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 419:1-419:12.
Ewald, Roland and Uhrmacher, Adelinde M. (2012) Setting up simulation experiments with SESSL. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 379:1-379:2. Poster.
Helms, Tobias and Rybacki, Stefan and Ewald, Roland and Uhrmacher, Adelinde M. (2012) An adaptive simulator for ML-rules. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 390:1-390:2. Poster.
Himmelspach, Jan and Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2010) Enhancing the Scalability of Simulations by Embracing Multiple Levels of Parallelization. In: Second International Workshop on High Performance Computational Systems Biology, 30 Sep - 01 Oct 2010, Twente, The Netherlands. Proceedings, published by IEEE, pp. 57-66.
Ewald, Roland and Schulz, Rene and Uhrmacher, Adelinde M. (2010) Selecting Simulation Algorithm Portfolios by Genetic Algorithms. In: 24th ACM/IEEE/SCS Workshop on Principles of Advanced and Distributed Simulation (PADS 2010), 17-19 May 2010, Atlanta, Georgia, USA. Proceedings, published by IEEE, Print ISSN: 1087-4097, pp. 48-56.
Ewald, Roland and Uhrmacher, Adelinde M. (2009) Automating the Runtime Performance Evaluation of Simulation Algorithms. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1079-1091.
Ewald, Roland and Uhrmacher, Adelinde M. and Saha, Kaustav (2009) Data mining for simulation algorithm selection. In: 2nd International Conference on Simulation Tools and Techniques for Communications, Networks and Systems (SimuTools 2009), 02-06 Mar, Rome, Italy. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 14:1-14:10.
Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2009) An Efficient and Adaptive Mechanism for Parallel Simulation Replication. In: 23rd Workshop on Principles of Advanced and Distributed Simulation (PADS 2009), 22-25 Jun 2010, Lake Placid, New York, USA. Proceedings, published by IEEE, pp. 104-113.
Wang, Bing and Himmelspach, Jan and Ewald, Roland and Yao, Yiping and Uhrmacher, Adelinde M. (2009) Experimental Analysis of Logical Process Simulation Algorithms in JAMES II. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 1167-1179.
Ewald, Roland and Himmelspach, Jan and Jeschke, Matthias and Leye, Stefan and Uhrmacher, Adelinde M. (2009) Performance Issues in Evaluating Models and Designing Simulation Algorithms. In: International Workshop on High Performance Computational Systems Biology (HiBi 2009), 14-16 Oct 2010, Trento, Italy. Proceedings, published by IEEE, pp. 71-80.
Bohk, Christina and Ewald, Roland and Uhrmacher, Adelinde M. (2009) Probabilistic Population Projection with JAMES II. In: Winter Simulation Conference (WSC 2009), 13-16 Dec 2009, Austin, TX, USA. Proceedings, published by IEEE, Electronic ISSN: 1558-4305, pp. 2008-2019.
Wang, Bing and Himmelspach, Jan and Ewald, Roland and Yao, Yiping and Uhrmacher, Adelinde M. (2009) An experimental analysis environment for logical process simulation algorithms. In: 2nd International Conference on Simulation Tools and Techniques for Communications, Networks and Systems (SimuTools 2009), 02-06 Mar, Rome, Italy. Proceedings, published by Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering (ICST), Brussels, Belgium, 40:1-40:2.
Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. (2008) An Algorithm Selection Approach for Simulation Systems. In: 22st International Workshop on Principles of Advanced and Distributed Simulation, PADS 2008, June 3-6, Rome, Italy. Proceedings,, pp. 91-98.
Leye, Stefan and Himmelspach, Jan and Jeschke, Matthias and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A Grid-Inspired Mechanism for Coarse-Grained Experiment Execution. In: 12th IEEE/ACM International Symposium on Distributed Simulation and Real-Time Applications, 2008, October 27-29, Vancouver, BC, Canada. Proceedings,, pp. 7-16.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Jeschke, Matthias and John, Mathias and Leye, Stefan and Maus, Carsten and Röhl, Mathias and Ewald, Roland (2008) One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II. In: 1st International Workshop Formal Methods in Systems Biology, FMSB 2008, June 4-5, Cambridge, UK. Proceedings,, pp. 123-138.
Jeschke, Matthias and Park, Alfred and Ewald, Roland and Fujimoto, Richard and Uhrmacher, Adelinde M. (2008) Parallel and Distributed Spatial Simulation of Chemical Reactions. In: 22st International Workshop on Principles of Advanced and Distributed Simulation, PADS 2008, June 3-6, Roma, Italy. Proceedings,, pp. 51-59.
Himmelspach, Jan and Ewald, Roland and Uhrmacher, Adelinde M. (2008) A flexible and scalable experimentation layer. In: Winter Simulation Conference, WSC 2008, December 7-10, Miami, Florida, USA. Proceedings,, pp. 827-835.
Ewald, Roland and Rossel, Johannes and Himmelspach, Jan and Uhrmacher, Adelinde M. (2008) A plug-in-based architecture for random number generation in simulation systems. In: Proceedings of the 2008 Winter Simulation Conference, Global Gateway to Discovery, WSC 2008, InterContinental Hotel, Miami, Florida, USA, December 7-10, 2008. Proceedings,, pp. 836-844.
Uhrmacher, Adelinde M. and Ewald, Roland and John, Mathias and Maus, Carsten and Jeschke, Matthias and Biermann, Susanne (2007) Combining micro and macro-modeling in DEVS for computational biology. In: Proceedings of the Winter Simulation Conference, WSC 2007, Washington, DC, USA, December 9-12, 2007. Proceedings,, pp. 871-880.
Himmelspach, Jan and Ewald, Roland and Leye, Stefan and Uhrmacher, Adelinde M. (2007) Parallel and distributed simulation of parallel DEVS models. In: Spring Simulation Conference (SpringSim'07), March 25-29, Norfolk, Virginia, USA. Proceedings,, pp. 249-256.
Batt, Grégory and Bradley, Jeremy T. and Ewald, Roland and Fages, François and Hermanns, Holger and Hillston, Jane and Kemper, Peter and Martens, Alke and Mosterman, Pieter J. and Nielson, Flemming and Sokolsky, Oleg and Uhrmacher, Adelinde M. (2006) 06161 Working Groups' Report: The Challlenge of Combining Simulation and Verification. In: Simulation and Verification of Dynamic Systems, 17.04. - 22.04.2006.
Uhrmacher, Adelinde M. and Himmelspach, Jan and Röhl, Mathias and Ewald, Roland (2006) Introducing variable ports and multi-couplings for cell biological modeling in DEVS. In: Winter Simulation Conference, WSC 2006, December 3-6, Monterey, California, USA. Proceedings,, pp. 832-840.
Ewald, Roland and Gutzeit, Enrico and Schwanke, Sebastian and Uhrmacher, Adelinde M. and Lange, Christian and Biermann, Susanne and Maus, Carsten (2006) Multi-Level Modeling with DEVS - A Critical Inspection and Steps Towards a Feasible Approach. In: Winter Simulation Conference 2006 (WSC'2006), December 03-06, Monterey, CA, USA. Poster.
Ewald, Roland and Chen, Dan and Theodoropoulos, Georgios K. and Lees, Michael and Logan, Brian S. and Oguara, Ton and Uhrmacher, Adelinde M. (2006) Performance Analysis of Shared Data Access Algorithms for Distributed Simulation of Multi-Agent Systems. In: 20th IEEE/ACM/SCS Workshop on Principles of Advanced and Distributed Simulation, PADS 2006, Singapore, May 23-26, 2006. Proceedings,, pp. 29-36.
Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. and Chen, Dan and Theodoropoulos, Georgios K. (2006) A Simulation Approach to Facilitate Parallel and Distributed Discrete-Event Simulator Development. In: 10th IEEE International Symposium on Distributed Simulation and Real-Time Applications (DS-RT 2006), 2-4 October 2006, Malaga, Spain. Proceedings,, pp. 209-218.
Ewald, Roland and Himmelspach, Jan and Uhrmacher, Adelinde M. (2006) A non-fragmenting partitioning algorithm for hierarchical models. In: Proceedings of the Winter Simulation Conference WSC 2006, Monterey, California, USA, December 3-6, 2006. Proceedings,, pp. 848-855.
Ewald, Roland (2006) Simulation of Load Balancing Alsorithms for Discrete Event Simulations. Diploma thesis, Institute of Computer Science, University of Rostock.
