 | Up a level |
Bittig, Arne T. (2017) ML-Space: Hybrid Spatial Gillespie and Brownian Motion Simulation at Multiple Levels, and a Rule-based Description Language. PhD thesis, Institute of Computer Science, University of Rostock.
Bittig, Arne T. and Uhrmacher, Adelinde M. (2016) ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-level Rule-based Models in Cell Biology. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 14 (6), pp. 1339-1349. ISSN 1545-5963.
Waltemath, Dagmar and Karr, Jonathan and Bergmann, Frank and Chelliah, Vijayalakshmi and Hucka, Michael and Krantz, Marcus and Liebermeister, Wolfram and Mendes, Pedro and Myers, Chris and Pir, Pinar and Alaybeyoglu, Begum and Aranganathan, Naveen and Baghalian, Kambiz and Bittig, Arne T. and Burke, Paulo and Cantarelli, Matteo and Chew, Yin and Costa, Rafael and Cursons, Joseph and Czauderna, Tobias and Goldberg, Arthur and Gomez, Harold and Hahn, Jens and Hameri, Tuure and Gardiol, Daniel and Kazakiewicz, Denis and Kiselev, Ilya and Knight-Schrijver, Vincent and Knupfer, Christian and Konig, Matthias and Lee, Daewon and Lloret-Villas, Audald and Mandrik, Nikita and Medley, J and Moreau, Bertrand and Naderi-Meshkin, Hojjat and Palaniappan, Sucheendra and Priego-Espinosa, Daniel and Scharm, Martin and Sharma, Mahesh and Smallbone, Kieran and Stanford, Natalie and Song, Je-Hoon and Theile, Tom and Tokic, Milenko and Tomar, Namrata and Toure, Vasundra and Uhlendorf, Jannis and Varusai, Thawfeek and Watanabe, Leandro and Wendland, Florian and Wolfien, Markus and Yurkovich, James and Zhu, Yan and Zardilis, Argyris and Zhukova, Anna and Schreiber, Falk (2016) Toward community standards and software for whole-cell modeling. IEEE Transactions on Biomedical Engineering, 63 (10), pp. 2007-2014. ISSN 0018-9294.
Luboschik, Martin and Röhlig, Martin and Bittig, Arne T. and Andrienko, Natalie and Schumann, Heidrun and Tominski, Christian (2015) Feature-Driven Visual Analytics of Chaotic Parameter-Dependent Movement. Computer Graphics Forum, 34 (3), pp. 421-430. ISSN 1467-8659 (online).
Guo, Gang and Bittig, Arne T. and Uhrmacher, Adelinde M. (2015) Lattice Monte Carlo simulation of Galilei variant anomalous diffusion. Journal of Computational Physics, 288, pp. 167-180. ISSN 0021-9991.
Eichner, Christian and Bittig, Arne T. and Schumann, Heidrun and Tominski, Christian (2014) Analyzing simulations of biochemical systems with feature-based visual analytics. Computers & Graphics, 38, pp. 18-26. ISSN 00978493.
Bittig, Arne T. and Matschegewski, Claudia and Nebe, J. Barbara and Stählke, Susanne and Uhrmacher, Adelinde M. (2014) Membrane related dynamics and the formation of actin in cells growing on micro-topographies: a spatial computational model. BMC Systems Biology, 8 (1), p. 106. ISSN 1752-0509.
Bittig, Arne T. and Reinhardt, Florian and Baltrusch, Simone and Uhrmacher, Adelinde M. (2014) Predictive Modelling of Mitochondrial Spatial Structure and Health. In: International Conference on Computational Methods in Systems Biology (CMSB 2014), 17-19 Nov 2014, Manchester, UK. Proceedings, published by Springer, Cham, Lecture Notes in Computer Science (LNCS, Volume 8859), pp. 252-255.
Eichner, Christian and Bittig, Arne T. and Schumann, Heidrun and Tominski, Christian (2013) Feature-Based Visual Analytics for Studying Simulations of Dynamic Bi-Stable Spatial Systems. In: EuroVis Workshop on Visual Analytics (EuroVA), 17-21 Jun 2013, Leipzig, Germany.
Bittig, Arne T. and Uhrmacher, Adelinde M. and Matschegewski, Claudia and Nebe, J. Barbara (2012) Spatial simulation of actin filament dynamics on structured surfaces. In: Winter Simulation Conference (WSC 2012), 09-12 Dec 2012, Berlin, Germany. Proceedings, published by IEEE, 364:1-364:2. Poster.
Luboschik, Martin and Tominski, Christian and Bittig, Arne T. and Uhrmacher, Adelinde M. and Schumann, Heidrun (2012) Towards Interactive Visual Analysis of Microscopic-Level Simulation Data. In: Interactive Visual Analysis of Data (SIGRAD 2012), 29-30 Nov 2012, Växjö, Sweden. Proceedings, published by Linköping University Electronic Press, Linköpings universitet, Sweden, pp. 91-94.
Bittig, Arne T. and Haack, Fiete and Maus, Carsten and Uhrmacher, Adelinde M. (2011) Adapting rule-based model descriptions for simulating in continuous and hybrid space. In: 9th International Conference on Computational Methods in Systems Biology (CMSB 2011), 21-23 Sep 2011, Paris, France. Proceedings, published by ACM, NewYork, USA, pp. 161-170.
Bittig, Arne T. and Uhrmacher, Adelinde M. (2010) Spatial modeling in cell biology at multiple levels. In: Winter Simulation Conference (WSC 2010), 05-08 Dec 2010, Baltimore, Maryland, USA. Proceedings, published by IEE, Electronic ISSN: 1558-4305, pp. 608-619.
Bittig, Arne T. and Jeschke, Matthias and Uhrmacher, Adelinde M. (2010) Towards Modelling and Simulation of Crowded Environments in Cell Biology. In: International Conference of Numerical Analysis and Applied Mathematics (ICNAAM 2010), 19-25 Sep 2010, Rhodes, Greece. Proceedings, published by AIP Conference Proceedings, 1281(1), pp. 1326-1329.
